33   short unsigned** hamming;  in TBE_Compute()  local
58 …Alloc_TBE_Matrices(fd_reftree->notu, &i_matrix, &c_matrix, &hamming, &min_dist, &min_dist_edge, &c…  in TBE_Compute()
66 			    hamming, min_dist, min_dist_edge,  in TBE_Compute()
78 …Free_TBE_Matrices(fd_reftree->notu, &i_matrix, &c_matrix, &hamming, &min_dist, &min_dist_edge, &cl…  in TBE_Compute()
95 			short unsigned*** c_matrix, short unsigned*** hamming,  in Alloc_TBE_Matrices()  argument
105 …(*hamming) = (short unsigned**) malloc(nb_edges*sizeof(short unsigned*)); /* matrix of Hamming dis…  in Alloc_TBE_Matrices()
109     (*hamming)[i] = (short unsigned*) malloc(nb_edges*sizeof(short unsigned));  in Alloc_TBE_Matrices()
116 		       short unsigned*** hamming, short unsigned** min_dist,  in Free_TBE_Matrices()  argument
123     free((*hamming)[i]);  in Free_TBE_Matrices()
127   free((*hamming));  in Free_TBE_Matrices()
251 			 short unsigned** hamming, short unsigned* min_dist,  in Update_IC_Boot_Tree()  argument
277 … i_matrix, c_matrix, hamming, min_dist, min_dist_edge, cluster_sizes, ref_branches, boot_branches);  in Update_IC_Boot_Tree()
286 … i_matrix, c_matrix, hamming, min_dist, min_dist_edge, cluster_sizes, ref_branches, boot_branches);  in Update_IC_Boot_Tree()
295 … i_matrix, c_matrix, hamming, min_dist, min_dist_edge, cluster_sizes, ref_branches, boot_branches);  in Update_IC_Boot_Tree()
306     hamming[i][boot_edge_id] =  in Update_IC_Boot_Tree()
312 …if (hamming[i][boot_edge_id] > N/2 /* floor value */) hamming[i][boot_edge_id] = N - hamming[i][bo…  in Update_IC_Boot_Tree()
314     if (hamming[i][boot_edge_id] < min_dist[i]){  in Update_IC_Boot_Tree()
315       min_dist[i] = hamming[i][boot_edge_id];  in Update_IC_Boot_Tree()
324 			     short unsigned** hamming, short unsigned* min_dist,  in Update_All_IC_Boot_Tree()  argument
332 …ree, root, root->v1, &(boot_branches[root->br_id1]), i_matrix, c_matrix, hamming, min_dist, min_di…  in Update_All_IC_Boot_Tree()
333 …ree, root, root->v2, &(boot_branches[root->br_id2]), i_matrix, c_matrix, hamming, min_dist, min_di…  in Update_All_IC_Boot_Tree()