Lines Matching refs:maxErrors
66 int maxErrors, // how many errors they may have in fillupStartpos() argument
83 sortedStartPos[i] = (int)((seqLength - fragmentSize - maxErrors + 1.0) * rand() / TEMP_RAND_MAX); in fillupStartpos()
132 int maxErrors, // how many errors they may have
162 resize(bucketCounter,maxErrors,0);
165 resize(kickOutCount,maxErrors,0);
171 reserve(modificationPattern, readLength + maxErrors);
217 …fillupStartpos(sortedStartPos, numReads, readLength, maxErrors, libSize, libError, seqLength, forw…
222 int maxEnd = startPos + readLength + maxErrors - 1;
267 countErrors = maxErrors + 1;
286 if(trueLength == readLength || countErrors >= maxErrors)
288 if(countErrors < maxErrors)// && currOp != SEQAN_INSERT)