Lines Matching refs:hbonds
4999 imatrix hbonds; in CalcSecStructure() local
5082 GetMatrixMemory ( hbonds,nres,3,0,0 ); in CalcSecStructure()
5087 for (j=0;j<3;j++) hbonds [i][j] = 0; in CalcSecStructure()
5102 while ((hbonds[ir1][k]!=0) && (k<2)) k++; in CalcSecStructure()
5103 hbonds [ir1][k] = -irdif; in CalcSecStructure()
5110 while ((hbonds[ir2][k]!=0) && (k<2)) k++; in CalcSecStructure()
5111 hbonds [ir2][k] = irdif; in CalcSecStructure()
5123 while ((k<=2) && (hbonds[i][k]!=0)) { in CalcSecStructure()
5124 if (hbonds[i][k]==-5) { in CalcSecStructure()
5130 if (hbonds[i][k]==-3) { in CalcSecStructure()
5139 while ((k<=2) && (hbonds[i][k]!=0)) { in CalcSecStructure()
5140 if (hbonds[i][k]==-4) { in CalcSecStructure()
5163 while ((k<=2) && (hbonds[i][k]!=0)) { in CalcSecStructure()
5165 irdif = hbonds[i][k]; in CalcSecStructure()
5169 while ((l<=2) && (hbonds[j][l]!=0)) { in CalcSecStructure()
5171 if (hbonds[j][l]==-irdif) { in CalcSecStructure()
5176 if (hbonds[j][l]==-irdif-2) { in CalcSecStructure()
5181 if (hbonds[j][l]==-irdif-3) { in CalcSecStructure()
5195 j = i + hbonds[i][k] + 2; in CalcSecStructure()
5198 while ((l<=2) && (hbonds[j][l]!=0)) { in CalcSecStructure()
5200 if (hbonds[j][l]==-irdif-4) { in CalcSecStructure()
5205 if (hbonds[j][l]==-irdif-2) { in CalcSecStructure()
5214 j = i + hbonds[i][k] - 1; in CalcSecStructure()
5217 while ((l<=2) && (hbonds[j][l]!=0)) { in CalcSecStructure()
5218 if (hbonds[j][l]==-irdif+1) { in CalcSecStructure()
5234 j = i + hbonds[i][k] + 3; in CalcSecStructure()
5237 while ((l<=2) && (hbonds[j][l]!=0)) { in CalcSecStructure()
5238 if ((hbonds[j][l]==-irdif+5) && (i>0)) { in CalcSecStructure()
5248 } else if (hbonds[j][l]==-irdif-3) { in CalcSecStructure()
5278 FreeMatrixMemory ( hbonds,nres,0,0 ); in CalcSecStructure()