Lines Matching refs:GetBond

1401           ringbond = _mol.GetBond(prev_rj, index);  in PerceiveAromatic()
1433 ringbond = _mol.GetBond(nbr->GetIdx(), index); in PerceiveAromatic()
1451 ringbond = _mol.GetBond(first_rj, index); in PerceiveAromatic()
1511 if (!((_mol.GetBond(atom, &*nbr))->IsAromatic()) || !nbr->IsInRingSize(5)) in GetType()
1521 if (!((_mol.GetBond(&*nbr, &*nbrNbr))->IsAromatic()) || !nbrNbr->IsInRingSize(5)) in GetType()
1734 bond = _mol.GetBond(&*nbrNbr, &*nbrNbrNbr); in GetType()
1795 bond = _mol.GetBond(&*nbr, &*nbrNbr); in GetType()
1819 bond = _mol.GetBond(&*nbrNbr, &*nbrNbrNbr); in GetType()
1833 bond = _mol.GetBond(&*nbrNbr, &*nbrNbrNbr); in GetType()
1898 bond = _mol.GetBond(&*nbr, atom); in GetType()
1982 bond = _mol.GetBond(&*nbr, atom); in GetType()
1988 bond = _mol.GetBond(&*nbr, atom); in GetType()
2047 bond = _mol.GetBond(&*nbr, &*nbrNbr); in GetType()
2063 bond = _mol.GetBond(&*nbr, &*nbrNbr); in GetType()
2114 bond = _mol.GetBond(&*nbr, &*nbrNbr); in GetType()
2188 bond = _mol.GetBond(&*nbr, atom); in GetType()
2202 bond = _mol.GetBond(&*nbr, atom); in GetType()
2248 bond = _mol.GetBond(&*nbr, atom); in GetType()
2307 bond = _mol.GetBond(&*nbr, atom); in GetType()
2396 OBBond* bond = nbr->GetBond(&*nbr2); in GetType()
2487 bond = _mol.GetBond(&*nbr, atom); in GetType()
2520 bond = _mol.GetBond(&*nbr, atom); in GetType()
2542 bond = _mol.GetBond(&*nbr, atom); in GetType()
3171 if (b->GetBond(c)->IsAromatic()) { in SetupCalculations()
3196 OBBond *bond = a->GetBond(b); in SetupCalculations()
3252 OBBond *bond = b->GetBond(c); in SetupCalculations()
3779 OBBond *bond = nbr->GetBond(&*nbr2); in SetFormalCharges()
4485 OBBond *bond = _mol.GetBond(a, b); in GetBondType()
4635 OBBond *bond = _mol.GetBond(b, c); in GetTorsionType()
5041 BOab = a->GetBond(b)->GetBondOrder(); in GetRuleBondLength()
5048 if (a->GetBond(b)->IsAromatic()) { in GetRuleBondLength()