Lines Matching refs:LOCANT_EL

164 									!isThisALocant.getName().equals(LOCANT_EL) ||  in resolveAmbiguities()
178 …if (isThisALocant == null || !isThisALocant.getName().equals(LOCANT_EL) || isThisALocant.getValue(… in resolveAmbiguities()
244 if (elName.equals(LOCANT_EL)) { in processLocants()
386 Element newLocant = new TokenEl(LOCANT_EL, sb.toString()); in ifCarbohydrateLocantConvertToAminoAcidStyleLocant()
435 ompLocant.setName(LOCANT_EL); in convertOrthoMetaParaToLocants()
566 Element locant = new TokenEl(LOCANT_EL, "N"); in processAlkaneStemModifications()
653 …if(possiblyALocant !=null && possiblyALocant.getName().equals(LOCANT_EL)&& mvalue==possiblyALocant… in processHeterogenousHydrides()
685 …tSiblingIgnoringCertainElements(possiblyAnotherHeteroAtom, new String[]{LOCANT_EL, MULTIPLIER_EL})… in processHeterogenousHydrides()
734 if (possibleLocant !=null && possibleLocant.getName().equals(LOCANT_EL)){ in processHeterogenousHydrides()
995 …if (possibleLocant !=null && possibleLocant.getName().equals(LOCANT_EL) && possibleLocant.getValue… in assignLocantUsingPreviousElementIfPresent()
1005 …if (possibleLocant !=null && possibleLocant.getName().equals(LOCANT_EL) && possibleLocant.getValue… in processLocantAssigningForEndoExoSynAnti()
1066 Element newLocantEl = new TokenEl(LOCANT_EL, StringTools.stringListToString(locants, ",")); in processUnbracketedAlphaBetaStereochemistry()
1087 Element locantEl = new TokenEl(LOCANT_EL, sb.toString()); in processRelativeCisTrans()
1127 Element newLocant = new TokenEl(LOCANT_EL, StringTools.stringListToString(locants, ",")); in duplicateLocantFromStereoTermIfAdjacentToEneOrYlidene()
1289 && !OpsinTools.getNextSibling(possibleHeteroatomOrMultiplier).getName().equals(LOCANT_EL)) in processLambdaConvention()
1370 lambdaConventionEl.setName(LOCANT_EL); in processLambdaConvention()
1752 …nt previous = OpsinTools.getPreviousSiblingIgnoringCertainElements(group, new String[]{LOCANT_EL}); in processRings()
2228 …if (isThisALocant == null || !isThisALocant.getName().equals(LOCANT_EL) || isThisALocant.getValue(… in handleGroupIrregularities()
2236 if (possibleLocant != null && possibleLocant.getName().equals(LOCANT_EL) && in handleGroupIrregularities()
2239 …if (possibleSuffix == null || possibleSuffix.getName().equals(LOCANT_EL)){//if there is a suffix a… in handleGroupIrregularities()
2370 …if (possibleLocant==null || !possibleLocant.getName().equals(LOCANT_EL)){//only need to give one a… in handleGroupIrregularities()
2374 Element newLocant =new TokenEl(LOCANT_EL, "9"); in handleGroupIrregularities()
2527 …if (previousEl ==null || !previousEl.getName().equals(LOCANT_EL) || groupValue.equals("aldehydo")){ in handleGroupIrregularities()
2550 if (alphaOrBetaLocantEl != null && alphaOrBetaLocantEl.getName().equals(LOCANT_EL) ){ in handleGroupIrregularities()