Lines Matching defs:sim
58 getRandomSeed(Simulation& sim) in getRandomSeed()
431 .def("updateSim", [](const Simulation& sim) { smolUpdateSim(sim.getSimPtr()); }) in PYBIND11_MODULE()
435 [](Simulation& sim, char* dataname, bool erase) { in PYBIND11_MODULE()
450 [](Simulation& sim, char* dataname) { in PYBIND11_MODULE()
461 [](Simulation& sim, double timestart, double timestop, double timestep) { in PYBIND11_MODULE()
468 [](Simulation& sim) { return sim.getSimPtr()->tmin; }, in PYBIND11_MODULE()
469 [](Simulation& sim, double time) { in PYBIND11_MODULE()
476 [](Simulation& sim) { return sim.getSimPtr()->tmax; }, in PYBIND11_MODULE()
477 [](Simulation& sim, double timestop) { in PYBIND11_MODULE()
485 [](Simulation& sim) { return sim.getSimPtr()->dt; }, in PYBIND11_MODULE()
486 [](Simulation& sim, double timestep) { in PYBIND11_MODULE()
494 [](Simulation& sim) { return sim.getSimPtr()->accur; }, in PYBIND11_MODULE()
495 [](Simulation& sim, double accuracy) { sim.getSimPtr()->accur = accuracy; }) in PYBIND11_MODULE()
500 [](Simulation& sim) { return sim.getSimPtr()->randseed; }, in PYBIND11_MODULE()
501 [](Simulation& sim, int seed) { smolSetRandomSeed(sim.getSimPtr(), seed); }) in PYBIND11_MODULE()
506 [](const Simulation& sim) { return sim.getSimPtr()->quitatend; }, in PYBIND11_MODULE()
507 [](const Simulation& sim, bool quitatend) { in PYBIND11_MODULE()
514 [](Simulation& sim, const char* flags) { in PYBIND11_MODULE()
520 [](Simulation& sim, double timenow) { in PYBIND11_MODULE()
525 [](Simulation& sim, long int seed) { in PYBIND11_MODULE()
532 [](Simulation& sim, const char* method, double value) { in PYBIND11_MODULE()
542 [](Simulation& sim, const char* method, int timestep, int delay) { in PYBIND11_MODULE()
562 [](Simulation& sim, in PYBIND11_MODULE()
578 [](Simulation& sim, char* color) { in PYBIND11_MODULE()
588 [](Simulation& sim, array<double, 4> rgba) { in PYBIND11_MODULE()
595 [](Simulation& sim, double thickness, char* color) { in PYBIND11_MODULE()
602 [](Simulation& sim, double thickness, array<double, 4>& rgba) { in PYBIND11_MODULE()
609 [](Simulation& sim, double thickness, char* color) { in PYBIND11_MODULE()
616 [](Simulation& sim, double thickness, array<double, 4>& rgba) { in PYBIND11_MODULE()
622 [](Simulation& sim, char* color) { in PYBIND11_MODULE()
628 [](Simulation& sim, array<double, 4>& rgba) { in PYBIND11_MODULE()
634 [](Simulation& sim, char* item) { in PYBIND11_MODULE()
643 [](Simulation& sim, const char* path) { in PYBIND11_MODULE()
650 [](Simulation& sim, char* filename, int suffix, bool append) { in PYBIND11_MODULE()
658 [](Simulation& sim, const string& cmd, const char cmd_type, py::kwargs kwargs) { in PYBIND11_MODULE()
666 [](Simulation& sim, const char* commandstring) { in PYBIND11_MODULE()
677 [](Simulation& sim, const char* species, const char* mollist) { in PYBIND11_MODULE()
685 [](Simulation& sim, const char* species) -> int { in PYBIND11_MODULE()
691 [](Simulation& sim, const char* species) { in PYBIND11_MODULE()
698 [](Simulation& sim, int speciesindex) { in PYBIND11_MODULE()
728 [](Simulation& sim, const char* mollist) { in PYBIND11_MODULE()
734 [](Simulation& sim, const char* mollist) { in PYBIND11_MODULE()
740 [](Simulation& sim, const char* mollist) { in PYBIND11_MODULE()
747 [](Simulation& sim, int mollistindex, char* species) { in PYBIND11_MODULE()
754 [](Simulation& sim, const char* species, MolecState state, const char* mollist) { in PYBIND11_MODULE()
760 [](Simulation& sim, int maxmolecules) { in PYBIND11_MODULE()
786 [](Simulation& sim, char* species, int number, const char* compartment) { in PYBIND11_MODULE()
817 [](Simulation& sim, const char* species, MolecState state) { in PYBIND11_MODULE()
833 [](Simulation& sim, in PYBIND11_MODULE()
844 [](Simulation& sim, const char* species, MolecState state, char* color) { in PYBIND11_MODULE()
860 [](Simulation& sim, const char* species, MolecState state, double size) { in PYBIND11_MODULE()
870 [](Simulation& sim, int dimension, int highside, char type) { in PYBIND11_MODULE()
876 [](Simulation& sim, const char* surface) { in PYBIND11_MODULE()
882 [](Simulation& sim, const char* surface) { in PYBIND11_MODULE()
889 [](Simulation& sim, const char* surface) { in PYBIND11_MODULE()
896 [](Simulation& sim, int surfaceindex, char* surface) { in PYBIND11_MODULE()
927 [](Simulation& sim, in PYBIND11_MODULE()
950 [](Simulation& sim, in PYBIND11_MODULE()
963 [](Simulation& sim, const char* surface, const char* panel) { in PYBIND11_MODULE()
971 [](Simulation& sim, const char* surface, const char* panel) { in PYBIND11_MODULE()
992 [](Simulation& sim, in PYBIND11_MODULE()
1007 [](Simulation& sim, in PYBIND11_MODULE()
1020 [](Simulation& sim, const char* parameter, double value) { in PYBIND11_MODULE()
1043 [](Simulation& sim, in PYBIND11_MODULE()
1065 [](Simulation& sim, in PYBIND11_MODULE()
1091 [](Simulation& sim, const char* compartment) { in PYBIND11_MODULE()
1097 [](Simulation& sim, const char* compartment) { in PYBIND11_MODULE()
1103 [](Simulation& sim, const char* compartment) { in PYBIND11_MODULE()
1109 [](Simulation& sim, int compartmentindex, char* compartment) { in PYBIND11_MODULE()
1116 [](Simulation& sim, const char* compartment, const char* surface) { in PYBIND11_MODULE()
1123 [](Simulation& sim, const char* compartment, vector<double>& point) { in PYBIND11_MODULE()
1147 [](Simulation& sim, in PYBIND11_MODULE()
1156 ) { in PYBIND11_MODULE()
1187 [](Simulation& sim, vector<int>& order, const char* reaction) { in PYBIND11_MODULE()
1194 [](Simulation& sim, vector<int>& order, const char* reaction) { in PYBIND11_MODULE()
1201 [](Simulation& sim, int order, int reactionindex, char* reaction) { in PYBIND11_MODULE()
1208 [](Simulation& sim, const char* reaction, double rate, int type) { in PYBIND11_MODULE()
1227 [](Simulation& sim, in PYBIND11_MODULE()
1241 [](Simulation& sim, const char* reaction, vector<int>& rules) { in PYBIND11_MODULE()
1251 [](Simulation& sim, const char* port, const char* surface, PanelFace face) { in PYBIND11_MODULE()
1257 [](Simulation& sim, const char* port) { in PYBIND11_MODULE()
1263 [](Simulation& sim, const char* port) { in PYBIND11_MODULE()
1269 [](Simulation& sim, int portindex, char* port) { in PYBIND11_MODULE()
1291 [](Simulation& sim, in PYBIND11_MODULE()
1306 [](Simulation& sim, in PYBIND11_MODULE()
1319 [](Simulation& sim, const char* lattice, const char* port) { in PYBIND11_MODULE()
1326 [](Simulation& sim, const char* lattice, const char* species) { in PYBIND11_MODULE()
1332 [](Simulation& sim, const char* lattice) { in PYBIND11_MODULE()
1338 [](Simulation& sim, const char* lattice) { in PYBIND11_MODULE()
1345 [](Simulation& sim, int latticeindex, char* lattice) { in PYBIND11_MODULE()
1372 [](Simulation& sim, const char* lattice, const char* reaction, const int move) { in PYBIND11_MODULE()
1377 [](Simulation& sim, const string& filepath, const char* flags) { in PYBIND11_MODULE()
1383 [](Simulation& sim, const char* statement, char* params) { in PYBIND11_MODULE()
1391 [](Simulation& sim) { in PYBIND11_MODULE()
1398 .def("runSim", [](Simulation& sim) { return smolRunSim(sim.getSimPtr()); }) in PYBIND11_MODULE()
1400 [](Simulation& sim, double breaktime, bool overwrite) { in PYBIND11_MODULE()
1404 .def("displaySim", [](Simulation& sim) { return smolDisplaySim(sim.getSimPtr()); }); in PYBIND11_MODULE()