/* * This file is part of the GROMACS molecular simulation package. * * Copyright (c) 1991-2000, University of Groningen, The Netherlands. * Copyright (c) 2001-2004, The GROMACS development team. * Copyright (c) 2013,2014,2015,2018,2019,2020, by the GROMACS development team, led by * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, * and including many others, as listed in the AUTHORS file in the * top-level source directory and at http://www.gromacs.org. * * GROMACS is free software; you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License * as published by the Free Software Foundation; either version 2.1 * of the License, or (at your option) any later version. * * GROMACS is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with GROMACS; if not, see * http://www.gnu.org/licenses, or write to the Free Software Foundation, * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * * If you want to redistribute modifications to GROMACS, please * consider that scientific software is very special. Version * control is crucial - bugs must be traceable. We will be happy to * consider code for inclusion in the official distribution, but * derived work must not be called official GROMACS. Details are found * in the README & COPYING files - if they are missing, get the * official version at http://www.gromacs.org. * * To help us fund GROMACS development, we humbly ask that you cite * the research papers on the package. Check out http://www.gromacs.org. */ #ifndef GMX_GMXANA_NRAMA_H #define GMX_GMXANA_NRAMA_H #include "gromacs/fileio/trxio.h" #include "gromacs/topology/topology.h" #include "gromacs/utility/real.h" struct gmx_output_env_t; typedef struct { gmx_bool bShow; char* label; int iphi, ipsi; /* point in the dih array of xr... */ } t_phipsi; typedef struct { int ai[4]; int mult; real phi0; real ang; } t_dih; typedef struct { int ndih; t_dih* dih; int npp; t_phipsi* pp; t_trxstatus* traj; int natoms; int amin, amax; real t; rvec* x; matrix box; t_idef* idef; PbcType pbcType; gmx_output_env_t* oenv; } t_xrama; t_topology* init_rama(gmx_output_env_t* oenv, const char* infile, const char* topfile, t_xrama* xr, int mult); gmx_bool new_data(t_xrama* xr); #endif /* GMX_GMXANA_NRAMA_H */