/* ---------------------------------------------------------------------- This is the ██╗ ██╗ ██████╗ ██████╗ ██████╗ ██╗ ██╗████████╗███████╗ ██║ ██║██╔════╝ ██╔════╝ ██╔════╝ ██║ ██║╚══██╔══╝██╔════╝ ██║ ██║██║ ███╗██║ ███╗██║ ███╗███████║ ██║ ███████╗ ██║ ██║██║ ██║██║ ██║██║ ██║██╔══██║ ██║ ╚════██║ ███████╗██║╚██████╔╝╚██████╔╝╚██████╔╝██║ ██║ ██║ ███████║ ╚══════╝╚═╝ ╚═════╝ ╚═════╝ ╚═════╝ ╚═╝ ╚═╝ ╚═╝ ╚══════╝® DEM simulation engine, released by DCS Computing Gmbh, Linz, Austria http://www.dcs-computing.com, office@dcs-computing.com LIGGGHTS® is part of CFDEM®project: http://www.liggghts.com | http://www.cfdem.com Core developer and main author: Christoph Kloss, christoph.kloss@dcs-computing.com LIGGGHTS® is open-source, distributed under the terms of the GNU Public License, version 2 or later. It is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. You should have received a copy of the GNU General Public License along with LIGGGHTS®. If not, see http://www.gnu.org/licenses . See also top-level README and LICENSE files. LIGGGHTS® and CFDEM® are registered trade marks of DCS Computing GmbH, the producer of the LIGGGHTS® software and the CFDEM®coupling software See http://www.cfdem.com/terms-trademark-policy for details. ------------------------------------------------------------------------- Contributing author and copyright for this file: This file is from LAMMPS LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator http://lammps.sandia.gov, Sandia National Laboratories Steve Plimpton, sjplimp@sandia.gov Copyright (2003) Sandia Corporation. Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains certain rights in this software. This software is distributed under the GNU General Public License. ------------------------------------------------------------------------- */ #include #include "angle.h" #include "atom.h" #include "comm.h" #include "force.h" #include "math_const.h" #include "suffix.h" #include "atom_masks.h" #include "memory.h" #include "error.h" using namespace LAMMPS_NS; using namespace MathConst; /* ---------------------------------------------------------------------- */ Angle::Angle(LAMMPS *lmp) : Pointers(lmp) { energy = 0.0; writedata = 1; allocated = 0; suffix_flag = Suffix::NONE; maxeatom = maxvatom = 0; eatom = NULL; vatom = NULL; setflag = NULL; datamask = ALL_MASK; datamask_ext = ALL_MASK; } /* ---------------------------------------------------------------------- */ Angle::~Angle() { memory->destroy(eatom); memory->destroy(vatom); } /* ---------------------------------------------------------------------- check if all coeffs are set ------------------------------------------------------------------------- */ void Angle::init() { if (!allocated && atom->nangletypes) error->all(FLERR,"Angle coeffs are not set"); for (int i = 1; i <= atom->nangletypes; i++) if (setflag[i] == 0) error->all(FLERR,"All angle coeffs are not set"); init_style(); } /* ---------------------------------------------------------------------- setup for energy, virial computation see integrate::ev_set() for values of eflag (0-3) and vflag (0-6) ------------------------------------------------------------------------- */ void Angle::ev_setup(int eflag, int vflag) { int i,n; evflag = 1; eflag_either = eflag; eflag_global = eflag % 2; eflag_atom = eflag / 2; vflag_either = vflag; vflag_global = vflag % 4; vflag_atom = vflag / 4; // reallocate per-atom arrays if necessary if (eflag_atom && atom->nmax > maxeatom) { maxeatom = atom->nmax; memory->destroy(eatom); memory->create(eatom,comm->nthreads*maxeatom,"angle:eatom"); } if (vflag_atom && atom->nmax > maxvatom) { maxvatom = atom->nmax; memory->destroy(vatom); memory->create(vatom,comm->nthreads*maxvatom,6,"angle:vatom"); } // zero accumulators if (eflag_global) energy = 0.0; if (vflag_global) for (i = 0; i < 6; i++) virial[i] = 0.0; if (eflag_atom) { n = atom->nlocal; if (force->newton_bond) n += atom->nghost; for (i = 0; i < n; i++) eatom[i] = 0.0; } if (vflag_atom) { n = atom->nlocal; if (force->newton_bond) n += atom->nghost; for (i = 0; i < n; i++) { vatom[i][0] = 0.0; vatom[i][1] = 0.0; vatom[i][2] = 0.0; vatom[i][3] = 0.0; vatom[i][4] = 0.0; vatom[i][5] = 0.0; } } } /* ---------------------------------------------------------------------- tally energy and virial into global and per-atom accumulators virial = r1F1 + r2F2 + r3F3 = (r1-r2) F1 + (r3-r2) F3 = del1*f1 + del2*f3 ------------------------------------------------------------------------- */ void Angle::ev_tally(int i, int j, int k, int nlocal, int newton_bond, double eangle, double *f1, double *f3, double delx1, double dely1, double delz1, double delx2, double dely2, double delz2) { double eanglethird,v[6]; if (eflag_either) { if (eflag_global) { if (newton_bond) energy += eangle; else { eanglethird = THIRD*eangle; if (i < nlocal) energy += eanglethird; if (j < nlocal) energy += eanglethird; if (k < nlocal) energy += eanglethird; } } if (eflag_atom) { eanglethird = THIRD*eangle; if (newton_bond || i < nlocal) eatom[i] += eanglethird; if (newton_bond || j < nlocal) eatom[j] += eanglethird; if (newton_bond || k < nlocal) eatom[k] += eanglethird; } } if (vflag_either) { v[0] = delx1*f1[0] + delx2*f3[0]; v[1] = dely1*f1[1] + dely2*f3[1]; v[2] = delz1*f1[2] + delz2*f3[2]; v[3] = delx1*f1[1] + delx2*f3[1]; v[4] = delx1*f1[2] + delx2*f3[2]; v[5] = dely1*f1[2] + dely2*f3[2]; if (vflag_global) { if (newton_bond) { virial[0] += v[0]; virial[1] += v[1]; virial[2] += v[2]; virial[3] += v[3]; virial[4] += v[4]; virial[5] += v[5]; } else { if (i < nlocal) { virial[0] += THIRD*v[0]; virial[1] += THIRD*v[1]; virial[2] += THIRD*v[2]; virial[3] += THIRD*v[3]; virial[4] += THIRD*v[4]; virial[5] += THIRD*v[5]; } if (j < nlocal) { virial[0] += THIRD*v[0]; virial[1] += THIRD*v[1]; virial[2] += THIRD*v[2]; virial[3] += THIRD*v[3]; virial[4] += THIRD*v[4]; virial[5] += THIRD*v[5]; } if (k < nlocal) { virial[0] += THIRD*v[0]; virial[1] += THIRD*v[1]; virial[2] += THIRD*v[2]; virial[3] += THIRD*v[3]; virial[4] += THIRD*v[4]; virial[5] += THIRD*v[5]; } } } if (vflag_atom) { if (newton_bond || i < nlocal) { vatom[i][0] += THIRD*v[0]; vatom[i][1] += THIRD*v[1]; vatom[i][2] += THIRD*v[2]; vatom[i][3] += THIRD*v[3]; vatom[i][4] += THIRD*v[4]; vatom[i][5] += THIRD*v[5]; } if (newton_bond || j < nlocal) { vatom[j][0] += THIRD*v[0]; vatom[j][1] += THIRD*v[1]; vatom[j][2] += THIRD*v[2]; vatom[j][3] += THIRD*v[3]; vatom[j][4] += THIRD*v[4]; vatom[j][5] += THIRD*v[5]; } if (newton_bond || k < nlocal) { vatom[k][0] += THIRD*v[0]; vatom[k][1] += THIRD*v[1]; vatom[k][2] += THIRD*v[2]; vatom[k][3] += THIRD*v[3]; vatom[k][4] += THIRD*v[4]; vatom[k][5] += THIRD*v[5]; } } } } /* ---------------------------------------------------------------------- */ double Angle::memory_usage() { double bytes = comm->nthreads*maxeatom * sizeof(double); bytes += comm->nthreads*maxvatom*6 * sizeof(double); return bytes; }