| /dports/biology/avida/avida-2.12.4-src/avida-core/tests/_testrunner/ |
| H A D | testrunner.py | 67 tmpdir = None # string variable
|
| /dports/biology/bbmap/bbmap/current/shared/ |
| H A D | Shared.java | 191 public static String tmpdir(){return TMPDIR;} in tmpdir() method in Shared
|
| /dports/biology/emboss/EMBOSS-6.6.0/ajax/core/ |
| H A D | ajfile.c | 6415 AjPStr tmpdir = NULL; in ajFilenameReplacePathC() local
|
| /dports/biology/figtree/figtree-1.4.4/packaging_tools/windows/launch4j/src/net/sf/launch4j/ |
| H A D | Util.java | 73 String tmpdir = System.getProperty("launch4j.tmpdir"); in createTempFile() local
|
| /dports/biology/figtree/figtree-1.4.4/packaging_tools/windows/launch4j/src/net/sf/launch4j/ant/ |
| H A D | Launch4jTask.java | 59 private File tmpdir; // launch4j.tmpdir field in Launch4jTask
131 public void setTmpdir(File tmpdir) { in setTmpdir()
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| /dports/biology/hmmer/hmmer-3.3/easel/ |
| H A D | easel.c | 1974 char *tmpdir = NULL; in esl_tmpfile() local
|
| /dports/biology/infernal/infernal-1.1.3/easel/ |
| H A D | easel.c | 1974 char *tmpdir = NULL; in esl_tmpfile() local
|
| /dports/biology/jellyfish/jellyfish-2.3.0/lib/ |
| H A D | generator_manager.cc | 43 const char* tmpdir = getenv("TMPDIR"); in create_tmp_dir() local
63 std::vector<std::string> tmp_pipes::create_pipes(const std::string& tmpdir, int nb_pipes) in create_pipes()
|
| /dports/biology/jellyfish/jellyfish-2.3.0/unit_tests/ |
| H A D | test_stream_iterator.cc | 27 static char* tmpdir; member in __anonf083f4e70111::StreamIterator
62 char* StreamIterator::tmpdir; member in __anonf083f4e70111::StreamIterator
|
| /dports/biology/lamarc/lamarc-2.1.8/boost/archive/ |
| H A D | tmpdir.hpp | 32 char * tmpdir(){ in tmpdir() function
|
| /dports/biology/mmseqs2/MMseqs2-13-45111/lib/zstd/tests/fuzz/ |
| H A D | fuzz.py | 78 def tmpdir(): function
|
| /dports/biology/molden/molden5.8/ |
| H A D | xwin.c | 19658 char tmpdir[MAXDIRLEN]; local
|
| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/corelib/ |
| H A D | ncbifile.cpp | 3648 char* tmpdir = getenv("TMPDIR"); local
3661 const TXChar* tmpdir = NcbiSys_getenv(_TX("TEMP")); local
|
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/corelib/ |
| H A D | ncbifile.cpp | 3648 char* tmpdir = getenv("TMPDIR"); local
3661 const TXChar* tmpdir = NcbiSys_getenv(_TX("TEMP")); local
|
| /dports/biology/ncbi-toolkit/ncbi/demo/ |
| H A D | blastclust.c | 979 CharPtr tmpdir; in Main() local
|
| /dports/biology/p5-Bio-Graphics/Bio-Graphics-2.40/scripts/ |
| H A D | frend.pl | 376 sub tmpdir { subroutine
|
| /dports/biology/pbbam/pbbam-0.18.0/tests/scripts/cram/ |
| H A D | _run.py | 34 def runtests(paths, tmpdir, shell, indent=2, cleanenv=True, debug=False): argument
|
| /dports/biology/py-cutadapt/cutadapt-3.3/tests/ |
| H A D | conftest.py | 13 def run(tmpdir): argument
|
| H A D | test_command.py | 24 def test_standard_input_pipe(tmpdir, cores): argument
41 def test_standard_output(tmpdir, cores): argument
53 def test_explicit_standard_output(tmpdir, cores): argument
66 def test_force_fasta_output(tmpdir, cores): argument
|
| H A D | test_commandline.py | 87 def test_rest(run, tmpdir, cores): argument
94 def test_restfront(run, tmpdir): argument
122 def test_too_short(run, tmpdir, cores): argument
151 def test_too_long(run, tmpdir, cores): argument
172 def test_overlap_a(tmpdir, length): argument
343 def test_issue_46(run, tmpdir): argument
353 def test_info_file(run, tmpdir, cores): argument
362 def test_info_file_times(run, tmpdir, cores): argument
369 def test_info_file_fasta(run, tmpdir, cores): argument
597 def test_linked_info_file(tmpdir): argument
[all …]
|
| H A D | test_paired.py | 13 def run_paired(tmpdir): argument
31 def run_interleaved(tmpdir): argument
136 def test_missing_file(tmpdir): argument
141 def test_first_too_short(tmpdir, cores): argument
158 def test_second_too_short(tmpdir, cores): argument
175 def test_unmatched_read_names(tmpdir, cores): argument
325 def test_interleaved_neither_nor(tmpdir): argument
335 def test_interleaved_untrimmed_output(tmpdir): argument
416 def test_paired_demultiplex(tmpdir, cores): argument
490 def test_pair_adapters_unequal_length(tmpdir): argument
[all …]
|
| H A D | test_parser.py | 31 def test_parse_file_notation(tmpdir): argument
|
| /dports/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/ |
| H A D | map-file.c | 98 KDirectory *wd, const char *tmpdir, int pid, size_t bsize, const char *fork ) in MapFileMakeFork()
|
| H A D | sra-sort.h | 73 const char *tmpdir; member
|
| /dports/biology/stringtie/stringtie-2.1.1/SuperReads_RNA/global-1/jellyfish/lib/ |
| H A D | generator_manager.cc | 51 const char* tmpdir = getenv("TMPDIR"); in create_tmp_dir() local
71 std::vector<std::string> tmp_pipes::create_pipes(const std::string& tmpdir, int nb_pipes) in create_pipes()
|