| /dports/biology/sra-tools/sra-tools-2.11.0/tools2/assemble-fragments/ |
| H A D | fragment.hpp | 193 struct CIGAR : public std::vector<CIGAR_OP> { struct
200 …CIGAR(unsigned rlength, unsigned left_clip, unsigned qlength, unsigned right_clip, std::vector<CIG… in CIGAR() argument
208 CIGAR() in CIGAR() argument
214 explicit CIGAR(std::string const &str) in CIGAR() argument
314 CIGAR adjoint() const { in adjoint() argument
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| H A D | sam2ir.cpp | 52 auto const &CIGAR = fields[5]; in writeRow() local
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| /dports/biology/star/STAR-2.7.9a/source/ |
| H A D | ReadAlign_outputTranscriptCIGARp.cpp | 7 string CIGAR; in outputTranscriptCIGARp() local
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| H A D | Transcript_generateCigarP.cpp | 8 string CIGAR; in generateCigarP() local
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| H A D | ReadAlign_outputTranscriptSAM.cpp | 58 string CIGAR; in outputTranscriptSAM() local
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| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/htsgetreader/ |
| H A D | HtsgetRequestField.java | 12 CIGAR, enumConstant
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| /dports/biology/freebayes/freebayes-1.3.5/src/ |
| H A D | LeftAlign.h | 43 #define CIGAR std::vector<CigarOp> macro
85 #define CIGAR SeqLib::Cigar macro
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sra/readers/bam/test/ |
| H A D | samtools.hpp | 50 vector<Uint4> CIGAR; member
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| H A D | bam_compare.cpp | 137 string CIGAR = it.GetCIGAR(); in GetShortSeqData() local
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| H A D | bam_test.cpp | 156 string CIGAR = it.GetCIGAR(); in GetShortSeqData() local
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| /dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/ |
| H A D | samextract-tokens.h | 60 CIGAR = 269, enumerator
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| H A D | samextract-grammar.c | 128 CIGAR = 269, enumerator
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| /dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/align/ |
| H A D | samextract-tokens.h | 60 CIGAR = 269, enumerator
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| H A D | samextract-grammar.c | 128 CIGAR = 269, enumerator
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| /dports/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/ |
| H A D | sam.c | 580 DEF_PARSER_FUNCTION(MAPQ, CIGAR) in DEF_PARSER_FUNCTION() argument
638 DEF_PARSER_FUNCTION(CIGAR, RNEXT) in DEF_PARSER_FUNCTION() argument
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| /dports/biology/emboss/EMBOSS-6.6.0/ajax/core/ |
| H A D | ajassemwrite.c | 1384 AjPStr CIGAR = NULL; in assemoutWriteSamAlignment() local
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| /dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/ |
| H A D | BAM_Alignment.c | 355 static NGS_String *CIGAR(ctx_t ctx, char const OPCODE[], size_t const count, uint32_t const cigar[]) in CIGAR() function
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| /dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/ngs/ |
| H A D | BAM_Alignment.c | 355 static NGS_String *CIGAR(ctx_t ctx, char const OPCODE[], size_t const count, uint32_t const cigar[]) in CIGAR() function
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| /dports/biology/abyss/abyss-2.3.1/RResolver/btllib/include/btllib/ |
| H A D | seq_reader.hpp | 429 CIGAR, in is_sam_buffer() enumerator
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| /dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/align/ |
| H A D | bam.h | 833 BAMValidateStatsRow CIGAR; member
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| /dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/interfaces/align/ |
| H A D | bam.h | 833 BAMValidateStatsRow CIGAR; member
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| /dports/biology/subread/subread-2.0.2-source/src/ |
| H A D | core.c | 1231 int get_soft_clipping_length(char* CIGAR)
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