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Searched defs:DPRect (Results 1 – 2 of 2) sorted by relevance

/dports/biology/bowtie2/bowtie2-2.4.4/
H A Ddp_framer.h59 struct DPRect { struct
65 int64_t refl; // leftmost ref offset involved post trimming (incl)
68 int64_t refl_pretrim; // leftmost ref offset involved pre trimming (incl)
71 size_t triml; // positions trimmed from LHS
72 size_t trimr; // positions trimmed from RHS
83 size_t corel; // offset of column where leftmost "core" diagonal starts
88 size_t maxgap; // max # gaps - width of the gap bands
90 void write(std::ostream& os) const { in write()
100 bool entirelyTrimmed() const { in entirelyTrimmed()
108 bool repOk() const { in repOk()
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/dports/biology/hisat2/hisat2-2.2.1/
H A Ddp_framer.h59 struct DPRect { struct
65 int64_t refl; // leftmost ref offset involved post trimming (incl)
68 int64_t refl_pretrim; // leftmost ref offset involved pre trimming (incl)
71 size_t triml; // positions trimmed from LHS
72 size_t trimr; // positions trimmed from RHS
83 size_t corel; // offset of column where leftmost "core" diagonal starts
84 size_t corer; // offset of column where rightmost "core" diagonal starts
88 size_t maxgap; // max # gaps - width of the gap bands
94 bool entirelyTrimmed() const { in entirelyTrimmed()
102 bool repOk() const { in repOk()
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