Searched defs:Denseg (Results 1 – 8 of 8) sorted by relevance
398 CDense_seg& Denseg = Align->SetSegs().SetDenseg(); in x_MergeSeqAlignSet() local418 bool CInversionMergeAligner::x_IsAllGap(const CDense_seg& Denseg) in x_IsAllGap()
201 CDense_seg& Denseg = Align->SetSegs().SetDenseg(); in x_MergeSeqAlignSet() local
79 const CDense_seg& Denseg = Curr.GetSegs().GetDenseg(); in s_CoverageSeqLoc() local446 CDense_seg& Denseg = (*AlignIter)->SetSegs().SetDenseg(); in x_RunCleanup() local
489 CDense_seg& Denseg = Fixed->SetSegs().SetDenseg(); in x_FixAlignment() local637 bool CUnorderedSplitter::x_IsAllGap(const CDense_seg& Denseg) in x_IsAllGap()
568 CDense_seg& Denseg = Align.SetSegs().SetDenseg(); in x_RecurseMapSeqAligns() local
768 const CDense_seg& Denseg = Align.GetSegs().GetDenseg(); in ExtractRangesFromSeqAlign() local
783 CDense_seg& Denseg = New->SetSegs().SetDenseg(); in x_MakeSeqAlign() local
1611 const CDense_seg& Denseg = align.GetSegs().GetDenseg(); in x_CalcBiggestGap() local