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Searched defs:MAPQ (Results 1 – 14 of 14) sorted by relevance

/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/htsgetreader/
H A DHtsgetRequestField.java11 MAPQ, enumConstant
/dports/biology/star/STAR-2.7.9a/source/
H A DReadAlign_outputSpliceGraphSAM.cpp61 int MAPQ=P.outSAMmapqUnique; in outputSpliceGraphSAM() local
H A DReadAlign_outputTranscriptSAM.cpp210 int MAPQ=P.outSAMmapqUnique; in outputTranscriptSAM() local
H A DReadAlign_alignBAM.cpp107 int MAPQ=0; in alignBAM() local
/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/
H A DBAM_Record.h48 uint8_t MAPQ; member
H A DCSRA1_PileupEvent.c120 const int32_t * MAPQ; in CSRA1_PileupEventGetMappingQuality() local
/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/ngs/
H A DBAM_Record.h48 uint8_t MAPQ; member
H A DCSRA1_PileupEvent.c120 const int32_t * MAPQ; in CSRA1_PileupEventGetMappingQuality() local
/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/
H A Dsamextract-tokens.h59 MAPQ = 268, enumerator
H A Dsamextract-grammar.c127 MAPQ = 268, enumerator
/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/align/
H A Dsamextract-tokens.h59 MAPQ = 268, enumerator
H A Dsamextract-grammar.c127 MAPQ = 268, enumerator
/dports/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/
H A Dsam.c552 DEF_PARSER_FUNCTION(POS, MAPQ) in DEF_PARSER_FUNCTION() argument
580 DEF_PARSER_FUNCTION(MAPQ, CIGAR) in DEF_PARSER_FUNCTION() argument
/dports/biology/abyss/abyss-2.3.1/RResolver/btllib/include/btllib/
H A Dseq_reader.hpp428 MAPQ, in is_sam_buffer() enumerator