Searched defs:PatternParams (Results 1 – 12 of 12) sorted by relevance
65 struct PatternParams { struct66 PatternParams() { } in PatternParams() function68 PatternParams( in PatternParams() argument108 int format; // file format111 uint32_t seed; // pseudo-random seed118 pair<short, size_t> trimTo;121 size_t skip; // skip the first 'skip' patterns122 uint64_t upto; // max number of queries to read123 int nthreads; // number of threads for locking124 bool fixName; //[all …]
45 struct PatternParams { struct47 PatternParams() { } in PatternParams() function49 PatternParams( in PatternParams() function75 int format; // file format77 uint32_t seed; // pseudo-random seed78 size_t max_buf; // number of reads to buffer in one read79 bool solexa64; // true -> qualities are on solexa64 scale80 bool phred64; // true -> qualities are on phred64 scale84 size_t skip; // skip the first 'skip' patterns85 int nthreads; // number of threads for locking[all …]
96 struct PatternParams { struct97 PatternParams( in PatternParams() argument121 int format; // file format145 PatternSource(const PatternParams& p) : in PatternSource() argument
294 interface PatternParams { interface
346 interface PatternParams { interface
351 interface PatternParams { interface
353 interface PatternParams { interface