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Searched defs:PerReadMetrics (Results 1 – 3 of 3) sorted by relevance

/dports/biology/bowtie2/bowtie2-2.4.4/
H A Dread.h340 struct PerReadMetrics { struct
342 PerReadMetrics() { reset(); } in PerReadMetrics() argument
344 void reset() { in reset()
389 uint64_t nMateDps; // # mate DPs run on this read
397 uint64_t nRedundants; // # redundant seed hits
408 uint64_t seedMedian; // median seed hit count
415 uint64_t nFtabs; // # ftab lookups
432 uint64_t nFilt; // # mates filtered
447 bool doFmString;
448 FmString fmString;
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/dports/biology/bowtie/bowtie-1.3.1/
H A Dread.h345 struct PerReadMetrics { struct
347 PerReadMetrics() { reset(); } in PerReadMetrics() function
349 void reset() { in reset()
394 uint64_t nMateDps; // # mate DPs run on this read
395 uint64_t nMateDpSuccs; // # mate DPs run on this read
402 uint64_t nRedundants; // # redundant seed hits
413 uint64_t seedMedian; // median seed hit count
420 uint64_t nFtabs; // # ftab lookups
437 uint64_t nFilt; // # mates filtered
452 bool doFmString;
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/dports/biology/hisat2/hisat2-2.2.1/
H A Dread.h432 struct PerReadMetrics { struct
434 PerReadMetrics() { reset(); } in PerReadMetrics() argument
436 void reset() { in reset()
480 uint64_t nMateDps; // # mate DPs run on this read
481 uint64_t nMateDpSuccs; // # mate DPs run on this read
488 uint64_t nRedundants; // # redundant seed hits
499 uint64_t seedMedian; // median seed hit count
506 uint64_t nFtabs; // # ftab lookups
523 uint64_t nFilt; // # mates filtered
529 bool doFmString;
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