| /dports/biology/protomol/protomol/doc/Performance/ |
| H A D | performance.tex | 111 \subsection{Direct methods}
123 \subsection{Cutoff methods}
185 \subsection{Fast electrostatic methods}
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| /dports/biology/protomol/protomol/framework/frontend/ |
| H A D | inputValueDefinitions.cpp | 5 namespace ProtoMol { namespace
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| /dports/biology/protomol/protomol/applications/coulomb-app/ |
| H A D | registerIntegratorExemplars.cpp | 6 namespace ProtoMol { namespace
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| H A D | registerOutputExemplars.cpp | 11 namespace ProtoMol { namespace
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| H A D | registerTopologyExemplars.cpp | 8 namespace ProtoMol { namespace
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| /dports/biology/protomol/protomol/applications/iSGProtomol-app/base/ |
| H A D | TRANS.cpp | 7 namespace ProtoMol { namespace
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| H A D | XSC.cpp | 3 namespace ProtoMol { namespace
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| /dports/biology/protomol/protomol/applications/iSGProtomol-app/factories/ |
| H A D | iSGregisterIntegratorExemplars.cpp | 7 namespace ProtoMol { namespace
|
| H A D | iSGregisterOutputExemplars.cpp | 19 namespace ProtoMol { namespace
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| /dports/biology/protomol/protomol/applications/iSGProtomol-app/forces/ |
| H A D | iSGAngleSystemForceBase.cpp | 3 namespace ProtoMol { namespace
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| H A D | iSGBondSystemForceBase.cpp | 4 namespace ProtoMol { namespace
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| H A D | iSGDihedralSystemForceBase.cpp | 4 namespace ProtoMol { namespace
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| H A D | iSGIdealGasLennardJonesForce.cpp | 6 namespace ProtoMol { namespace
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| H A D | iSGImproperSystemForceBase.cpp | 4 namespace ProtoMol { namespace
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| H A D | iSGLennardJonesForce.cpp | 6 namespace ProtoMol { namespace
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| H A D | iSGNonbondedFullEwaldSystemForceBase.cpp | 4 namespace ProtoMol { namespace
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| H A D | iSGNonbondedPMEwaldSystemForceBase.cpp | 4 namespace ProtoMol { namespace
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| /dports/biology/protomol/protomol/framework/base/ |
| H A D | BSplineType.cpp | 4 namespace ProtoMol { namespace
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| H A D | ConstraintValueType.cpp | 4 namespace ProtoMol { namespace
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| H A D | PSF.cpp | 3 namespace ProtoMol { namespace
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| H A D | ValueType.cpp | 5 namespace ProtoMol { namespace
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| H A D | XYZ.cpp | 3 namespace ProtoMol { namespace
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| /dports/biology/protomol/protomol/framework/factories/ |
| H A D | registerIntegratorExemplars.cpp | 22 namespace ProtoMol { namespace
|
| H A D | registerOutputExemplars.cpp | 21 namespace ProtoMol { namespace
|
| H A D | registerTopologyExemplars.cpp | 9 namespace ProtoMol { namespace
|