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Searched defs:THostSpec (Results 1 – 20 of 20) sorted by relevance

/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/journaled_set/
H A Djournal_alignment_interface.h69 TScoreValue globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journa… in globalAlignment()
99 TScoreValue globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journa… in globalAlignment()
115 TScoreValue globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journa… in globalAlignment()
140 TScoreValue globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journa… in globalAlignment()
160 TScoreValue globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journa… in globalAlignment()
193 TScoreValue globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journa… in globalAlignment()
212 TScoreValue globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journa… in globalAlignment()
241 TScoreValue globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journa… in globalAlignment()
H A Djournaled_set_join_global_align_compact.h63 _joinInternal(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journal, in _joinInternal()
H A Djournaled_set_join_global_align_manhatten.h62 _joinInternal(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journal, in _joinInternal()
H A Djournal_alignment_traceback_adaptor.h66 _adaptTraceSegmentsTo(String<TValue, Journaled<THostSpec, SortedArray, TBuffSpec> > & targetJournal, in _adaptTraceSegmentsTo()
/dports/biology/seqan/seqan-library-2.4.0/include/seqan/journaled_set/
H A Djournal_alignment_interface.h69 TScoreValue globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journa… in globalAlignment()
99 TScoreValue globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journa… in globalAlignment()
115 TScoreValue globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journa… in globalAlignment()
140 TScoreValue globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journa… in globalAlignment()
160 TScoreValue globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journa… in globalAlignment()
193 TScoreValue globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journa… in globalAlignment()
212 TScoreValue globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journa… in globalAlignment()
241 TScoreValue globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journa… in globalAlignment()
H A Djournaled_set_join_global_align_compact.h63 _joinInternal(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journal, in _joinInternal()
H A Djournaled_set_join_global_align_manhatten.h62 _joinInternal(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journal, in _joinInternal()
H A Djournal_alignment_traceback_adaptor.h66 _adaptTraceSegmentsTo(String<TValue, Journaled<THostSpec, SortedArray, TBuffSpec> > & targetJournal, in _adaptTraceSegmentsTo()
/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/journaled_set/
H A Djournal_alignment_interface.h69 TScoreValue globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journa… in globalAlignment()
99 TScoreValue globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journa… in globalAlignment()
115 TScoreValue globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journa… in globalAlignment()
140 TScoreValue globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journa… in globalAlignment()
160 TScoreValue globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journa… in globalAlignment()
193 TScoreValue globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journa… in globalAlignment()
212 TScoreValue globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journa… in globalAlignment()
241 TScoreValue globalAlignment(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journa… in globalAlignment()
H A Djournaled_set_join_global_align_compact.h63 _joinInternal(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journal, in _joinInternal()
H A Djournaled_set_join_global_align_manhatten.h62 _joinInternal(String<TValue, Journaled<THostSpec, TJournalSpec, TBuffSpec> > & journal, in _joinInternal()
H A Djournal_alignment_traceback_adaptor.h66 _adaptTraceSegmentsTo(String<TValue, Journaled<THostSpec, SortedArray, TBuffSpec> > & targetJournal, in _adaptTraceSegmentsTo()
/dports/biology/seqan1/seqan-1.3.1/seqan/sequence_journaled/
H A Dsequence_journaled.h66 typedef THostSpec_ THostSpec; typedef
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/sequence_journaled/
H A Dsequence_journaled.h81 typedef THostSpec_ THostSpec; typedef
/dports/biology/seqan/seqan-library-2.4.0/include/seqan/sequence_journaled/
H A Dsequence_journaled.h81 typedef THostSpec_ THostSpec; typedef
/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/sequence_journaled/
H A Dsequence_journaled.h81 typedef THostSpec_ THostSpec; typedef
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/demos/tutorial/journaled_set/
H A Dsolution_online_search_assignment3.cpp41 … String<TValue, Journaled<THostSpec, TJournalSpec, TBufferSpec> > const & journal, in findPatternInJournalString()
H A Dexample_online_search.cpp118 … String<TValue, Journaled<THostSpec, TJournalSpec, TBufferSpec> > const & journal, in findPatternInJournalString()
H A Dsolution_online_search_assignment4.cpp112 … String<TValue, Journaled<THostSpec, TJournalSpec, TBufferSpec> > const & journal, in findPatternInJournalString()
H A Dsolution_online_search_finder.cpp85 … String<TValue, Journaled<THostSpec, TJournalSpec, TBufferSpec> > const & journal, in findPatternInJournalString()