| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/align/ |
| H A D | align_iterator_base.h | 64 typedef typename Row<TAlign>::Type TRow; typedef
171 typedef typename Row<TAlign>::Type TRow; in goNext() typedef
214 typedef typename Row<TAlign>::Type TRow; in goPrevious() typedef
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| H A D | alignment_operations.h | 91 typedef typename Row<TAlign>::Type TRow; in integrateAlign() typedef
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| /dports/biology/seqan1/seqan-1.3.1/seqan/align/ |
| H A D | align_algorithms.h | 71 typedef typename Row<TAlign>::Type TRow; in _pumpTraceToAlign() typedef
126 typedef typename Row<TAlign>::Type TRow; in integrateAlign() typedef
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| H A D | align_dynprog.h | 160 typedef typename Row<TAlign>::Type TRow; in _needlemanWunschTrace() typedef
391 typedef typename Row<TAlign>::Type TRow; in _gotohTrace() typedef
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/demos/tutorial/alignment/ |
| H A D | align.cpp | 14 typedef Row<TAlign>::Type TRow; // gapped sequence type in main() typedef
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| /dports/biology/seqan1/seqan-1.3.1/seqan/file/ |
| H A D | file_format_fasta_align.h | 160 typedef typename Row<TAlign>::Type TRow; in read() typedef
273 typedef typename Row<TAlign>::Type TRow; in _writeImpl() typedef
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| H A D | file_format_cgviz.h | 80 typedef typename Row<TAlign>::Type TRow; in _writeImpl() typedef
|
| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/gustaf/ |
| H A D | stellar_routines.h | 102 typedef typename Row<TAlign>::Type TRow; in _convertStellarReverseMatches() typedef
241 typedef typename StellarMatch<TSequence, TId>::TRow TRow; in _getScore() typedef
405 typedef typename Row<TAlign>::Type TRow; in _getStellarIndel() typedef
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| H A D | create_stellarmatches_from_file.h | 79 typedef typename Row<TAlign>::Type TRow; in _createStellarMatches() typedef
|
| /dports/biology/ncbi-toolkit/ncbi/api/ |
| H A D | viewmgr.c | 219 Int4 TRow, nVRow; in ViewMgr_xVRow2TRow() local
265 Int4 TRow) in ViewMgr_xTRow2VRow()
295 NLM_EXTERN Int4 ViewMgr_TRow2VRow (SeqAlign *salp, Int4 TRow) in ViewMgr_TRow2VRow()
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| /dports/biology/seqan1/seqan-1.3.1/apps/splazers/ |
| H A D | outputFormat.h | 191 typedef typename Row<TAlign>::Type TRow; in getErrorDistribution() typedef
254 typedef typename Row<TAlign>::Type TRow; in dumpAlignment() typedef
579 typedef typename Row<TAlign>::Type TRow; in dumpAlignment() typedef
1227 typedef typename Row<TAlign>::Type TRow; in dumpMatches() typedef
1428 typedef typename Row<TAlign>::Type TRow; in dumpMatches() typedef
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/splazers/ |
| H A D | outputFormat.h | 191 typedef typename Row<TAlign>::Type TRow; in getErrorDistribution() typedef
254 typedef typename Row<TAlign>::Type TRow; in dumpAlignment() typedef
581 typedef typename Row<TAlign>::Type TRow; in dumpAlignment() typedef
1312 typedef typename Row<TAlign>::Type TRow; in dumpMatches() typedef
1509 typedef typename Row<TAlign>::Type TRow; in dumpMatches() typedef
1771 typedef typename Row<TAlign>::Type TRow; in dumpMatches() typedef
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| /dports/biology/seqan1/seqan-1.3.1/seqan/refinement/ |
| H A D | graph_algorithm_refine_align.h | 119 typedef typename Row<TAlign>::Type TRow; in _getRefinedMatchScore() typedef
|
| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/graph_align/ |
| H A D | graph_algorithm_refine_align.h | 129 typedef typename Row<TAlign>::Type TRow; in _getRefinedMatchScore() typedef
|
| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/graph_align/ |
| H A D | graph_algorithm_refine_align.h | 129 typedef typename Row<TAlign>::Type TRow; in _getRefinedMatchScore() typedef
|
| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/graph_align/ |
| H A D | graph_algorithm_refine_align.h | 132 typedef typename Row<TAlign>::Type TRow; in _getRefinedMatchScore() typedef
|
| /dports/editors/libreoffice/libreoffice-7.2.6.2/reportdesign/source/filter/xml/ |
| H A D | xmlExport.hxx | 80 typedef ::std::vector< TCell > TRow; typedef in rptxml::ORptExport
|
| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/align/ |
| H A D | test_alignment_algorithms_dynamic_gap.h | 52 typedef typename Row<TAlignment const>::Type TRow; in _validateAlignment() typedef
|
| /dports/editors/libreoffice6/libreoffice-6.4.7.2/reportdesign/source/filter/xml/ |
| H A D | xmlExport.hxx | 89 typedef ::std::vector< TCell > TRow; typedef in rptxml::ORptExport
|
| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/micro_razers/ |
| H A D | outputFormat.h | 191 typedef typename Row<TAlign>::Type TRow; in getErrorDistribution() typedef
254 typedef typename Row<TAlign>::Type TRow; in dumpAlignment() typedef
|
| /dports/biology/seqan1/seqan-1.3.1/apps/razers/ |
| H A D | outputFormat.h | 191 typedef typename Row<TAlign>::Type TRow; in getErrorDistribution() typedef
254 typedef typename Row<TAlign>::Type TRow; in dumpAlignment() typedef
1151 typedef typename Row<TAlign>::Type TRow; in dumpMatches() typedef
|
| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/razers/ |
| H A D | outputFormat.h | 195 typedef typename Row<TAlign>::Type TRow; in getErrorDistribution() typedef
258 typedef typename Row<TAlign>::Type TRow; in dumpAlignment() typedef
1162 typedef typename Row<TAlign>::Type TRow; in dumpMatches() typedef
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| /dports/biology/seqan1/seqan-1.3.1/apps/razers2/ |
| H A D | outputFormat.h | 224 typedef typename Row<TAlign>::Type TRow; in getErrorDistribution() typedef
295 typedef typename Row<TAlign>::Type TRow; in dumpAlignment() typedef
378 typedef typename Row<TAlign>::Type TRow; in getCigarLine() typedef
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| /dports/biology/seqan1/seqan-1.3.1/seqan/graph_align/ |
| H A D | graph_align_banded_needleman_wunsch.h | 199 typedef String<TScoreValue> TRow; in _alignBandedNeedlemanWunsch() typedef
311 typedef String<TScoreValue> TRow; in _alignBandedNeedlemanWunsch() typedef
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| /dports/x11-fm/wcmcommander/WCMCommander-release-0.20.0/src/ |
| H A D | fileattributes.cpp | 124 int TRow = Row; in clFileAttributesWin() local
|