| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/align/ |
| H A D | global_alignment_specialized.h | 67 Gaps<TSequenceV, TGapsSpecV> & gapsV, in globalAlignment()
101 Gaps<TSequenceV, TGapsSpecV> & gapsV, in globalAlignment()
122 Gaps<TSequenceV, TGapsSpecV> & gapsV, in globalAlignment()
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| H A D | local_alignment_unbanded.h | 201 Gaps<TSequenceV, TGapsSpecV> & gapsV, in localAlignment()
222 Gaps<TSequenceV, TGapsSpecV> & gapsV, in localAlignment()
431 … And<Is<ContainerConcept<TSequenceV>>, Is<ContainerConcept<typename Value<TSequenceV>::Type>>> in SEQAN_FUNC_DISABLE_IF()
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| H A D | global_alignment_unbanded.h | 243 Gaps<TSequenceV, TGapsSpecV> & gapsV, in globalAlignment()
270 Gaps<TSequenceV, TGapsSpecV> & gapsV, in globalAlignment()
284 Gaps<TSequenceV, TGapsSpecV> & gapsV, in globalAlignment()
299 Gaps<TSequenceV, TGapsSpecV> & gapsV, in globalAlignment()
520 … And<Is<ContainerConcept<TSequenceV>>, Is<ContainerConcept<typename Value<TSequenceV>::Type>>> in SEQAN_FUNC_DISABLE_IF()
752 StringSet<Gaps<TSequenceV, TGapsSpecV>, TSetSpecV> & gapSeqSetV, in globalAlignment()
771 StringSet<Gaps<TSequenceV, TGapsSpecV>, TSetSpecV> & gapSeqSetV, in globalAlignment()
786 StringSet<Gaps<TSequenceV, TGapsSpecV>, TSetSpecV> & gapSeqSetV, in globalAlignment()
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| H A D | local_alignment_enumeration_unbanded.h | 101 Gaps<TSequenceV, TGapsSpecV> & gapsV, in nextLocalAlignment()
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| H A D | local_alignment_banded.h | 106 Gaps<TSequenceV, TGapsSpecV> & gapsV, in localAlignment()
128 Gaps<TSequenceV, TGapsSpecV> & gapsV, in localAlignment()
305 … And<Is<ContainerConcept<TSequenceV>>, Is<ContainerConcept<typename Value<TSequenceV>::Type>>> in SEQAN_FUNC_DISABLE_IF()
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| H A D | global_alignment_myers_impl.h | 77 typedef String<TAlphabetV, TSpecV> const TSequenceV; in _globalAlignmentScore() typedef
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| H A D | local_alignment_enumeration_banded.h | 102 Gaps<TSequenceV, TGapsSpecV> & gapsV, in nextLocalAlignment()
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| H A D | local_alignment_banded_waterman_eggert_impl.h | 513 Gaps<TSequenceV, TGapsSpecV> & gapsV, in _localAlignment()
563 Gaps<TSequenceV, TGapsSpecV> & gapsV, in _localAlignmentNext()
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/align/ |
| H A D | global_alignment_specialized.h | 67 Gaps<TSequenceV, TGapsSpecV> & gapsV, in globalAlignment()
101 Gaps<TSequenceV, TGapsSpecV> & gapsV, in globalAlignment()
122 Gaps<TSequenceV, TGapsSpecV> & gapsV, in globalAlignment()
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| H A D | local_alignment_unbanded.h | 201 Gaps<TSequenceV, TGapsSpecV> & gapsV, in localAlignment()
222 Gaps<TSequenceV, TGapsSpecV> & gapsV, in localAlignment()
431 … And<Is<ContainerConcept<TSequenceV>>, Is<ContainerConcept<typename Value<TSequenceV>::Type>>> in SEQAN_FUNC_DISABLE_IF()
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| H A D | global_alignment_unbanded.h | 243 Gaps<TSequenceV, TGapsSpecV> & gapsV, in globalAlignment()
270 Gaps<TSequenceV, TGapsSpecV> & gapsV, in globalAlignment()
284 Gaps<TSequenceV, TGapsSpecV> & gapsV, in globalAlignment()
299 Gaps<TSequenceV, TGapsSpecV> & gapsV, in globalAlignment()
520 … And<Is<ContainerConcept<TSequenceV>>, Is<ContainerConcept<typename Value<TSequenceV>::Type>>> in SEQAN_FUNC_DISABLE_IF()
752 StringSet<Gaps<TSequenceV, TGapsSpecV>, TSetSpecV> & gapSeqSetV, in globalAlignment()
771 StringSet<Gaps<TSequenceV, TGapsSpecV>, TSetSpecV> & gapSeqSetV, in globalAlignment()
786 StringSet<Gaps<TSequenceV, TGapsSpecV>, TSetSpecV> & gapSeqSetV, in globalAlignment()
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| H A D | local_alignment_enumeration_unbanded.h | 101 Gaps<TSequenceV, TGapsSpecV> & gapsV, in nextLocalAlignment()
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| H A D | local_alignment_banded.h | 106 Gaps<TSequenceV, TGapsSpecV> & gapsV, in localAlignment()
128 Gaps<TSequenceV, TGapsSpecV> & gapsV, in localAlignment()
305 … And<Is<ContainerConcept<TSequenceV>>, Is<ContainerConcept<typename Value<TSequenceV>::Type>>> in SEQAN_FUNC_DISABLE_IF()
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| H A D | global_alignment_myers_impl.h | 77 typedef String<TAlphabetV, TSpecV> const TSequenceV; in _globalAlignmentScore() typedef
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| H A D | local_alignment_enumeration_banded.h | 102 Gaps<TSequenceV, TGapsSpecV> & gapsV, in nextLocalAlignment()
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| H A D | local_alignment_banded_waterman_eggert_impl.h | 513 Gaps<TSequenceV, TGapsSpecV> & gapsV, in _localAlignment()
563 Gaps<TSequenceV, TGapsSpecV> & gapsV, in _localAlignmentNext()
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| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/align/ |
| H A D | global_alignment_specialized.h | 77 Gaps<TSequenceV, TGapsSpecV> & gapsV, in globalAlignment()
99 Gaps<TSequenceV, TGapsSpecV> & gapsV, in globalAlignment()
120 Gaps<TSequenceV, TGapsSpecV> & gapsV, in globalAlignment()
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| H A D | local_alignment_unbanded.h | 201 Gaps<TSequenceV, TGapsSpecV> & gapsV, in localAlignment()
222 Gaps<TSequenceV, TGapsSpecV> & gapsV, in localAlignment()
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| H A D | local_alignment_enumeration_unbanded.h | 101 Gaps<TSequenceV, TGapsSpecV> & gapsV, in nextLocalAlignment()
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| H A D | local_alignment_banded.h | 106 Gaps<TSequenceV, TGapsSpecV> & gapsV, in localAlignment()
128 Gaps<TSequenceV, TGapsSpecV> & gapsV, in localAlignment()
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| H A D | global_alignment_myers_impl.h | 77 typedef String<TAlphabetV, TSpecV> const TSequenceV; in _globalAlignmentScore() typedef
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| H A D | local_alignment_enumeration_banded.h | 102 Gaps<TSequenceV, TGapsSpecV> & gapsV, in nextLocalAlignment()
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| H A D | global_alignment_unbanded.h | 243 Gaps<TSequenceV, TGapsSpecV> & gapsV, in globalAlignment()
270 Gaps<TSequenceV, TGapsSpecV> & gapsV, in globalAlignment()
284 Gaps<TSequenceV, TGapsSpecV> & gapsV, in globalAlignment()
299 Gaps<TSequenceV, TGapsSpecV> & gapsV, in globalAlignment()
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| H A D | global_alignment_banded.h | 158 Gaps<TSequenceV, TGapsSpecV> & gapsV, in globalAlignment()
188 Gaps<TSequenceV, TGapsSpecV> & gapsV, in globalAlignment()
204 Gaps<TSequenceV, TGapsSpecV> & gapsV, in globalAlignment()
221 Gaps<TSequenceV, TGapsSpecV> & gapsV, in globalAlignment()
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| H A D | local_alignment_banded_waterman_eggert_impl.h | 513 Gaps<TSequenceV, TGapsSpecV> & gapsV, in _localAlignment()
563 Gaps<TSequenceV, TGapsSpecV> & gapsV, in _localAlignmentNext()
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