/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/sequence/ |
H A D | string_set_owner.h | 102 StringSet(String<TString, TOtherSpec> const &other) : in StringSet() 164 StringSet<TString, Owner<Default> > & me, in appendValue() 183 StringSet<TString, Owner<TSpec> > & me, in assignValue() 223 value(StringSet<TString, Owner<Default> > & me, TPos pos) in value() 241 erase(StringSet<TString, Owner<Default> > & me, TPos pos) in erase() 263 getValueById(StringSet<TString, Owner<TSpec> >& me, in getValueById() 288 assignValueById(StringSet<TString, Owner<TSpec> > & me, in assignValueById() 323 positionToId(StringSet<TString, Owner<TSpec> > &, in positionToId() 336 positionToId(StringSet<TString, Owner<TSpec> > const &, in positionToId() 349 idToPosition(StringSet<TString, Owner<TSpec> > const&, in idToPosition() [all …]
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H A D | string_set_dependent_generous.h | 91 StringSet(StringSet<TString, Owner<TDefault> > const& _other) : in StringSet() function 132 StringSet<TString, Dependent<Generous> > & me, in appendValue() 146 inline void clear(StringSet<TString, Dependent<Generous> > & me) in clear() 160 length(StringSet<TString, Dependent<Generous> > & me) in length() 171 value(StringSet<TString, Dependent<Generous> >& me, TPos pos) in value() 183 value(StringSet<TString, Dependent<Generous> > const & me, TPos pos) in value() 199 getValueById(StringSet<TString, Dependent<Generous> >& me, in getValueById() 215 assignValueById(StringSet<TString, Dependent<Generous> >& me, in assignValueById() 255 positionToId(StringSet<TString, Dependent<Generous> >& me, in positionToId() 264 positionToId(StringSet<TString, Dependent<Generous> > const& me, in positionToId() [all …]
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H A D | string_set_dependent_tight.h | 118 StringSet(StringSet<TString, Owner<TDefault> > const & _other) : in StringSet() function 161 StringSet<TString, Dependent<Tight> > & me, in appendValue() 180 inline void clear(StringSet<TString, Dependent<Tight> >& me) in clear() 198 value(StringSet<TString, Dependent<Tight> >& me, TPos pos) in value() 206 value(StringSet<TString, Dependent<Tight> >const & me, TPos pos) in value() 217 getValueById(StringSet<TString, Dependent<Tight> > & me, in getValueById() 230 assignValueById(StringSet<TString, Dependent<Tight> >& me, in assignValueById() 242 assignValueById(StringSet<TString, Dependent<Tight> >& me, in assignValueById() 301 positionToId(StringSet<TString, Dependent<Tight> > & me, in positionToId() 310 positionToId(StringSet<TString, Dependent<Tight> > const & me, in positionToId() [all …]
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/sequence/ |
H A D | string_set_owner.h | 102 StringSet(String<TString, TOtherSpec> const & other) : in StringSet() 164 StringSet<TString, Owner<Default> > & me, in appendValue() 183 StringSet<TString, Owner<TSpec> > & me, in assignValue() 210 StringSet<TString, Owner<TSpec> > & me, in insertValue() 226 StringSet<TString, Owner<> > & target, in replace() 333 getValueById(StringSet<TString, Owner<TSpec> >& me, in getValueById() 358 assignValueById(StringSet<TString, Owner<TSpec> > & me, in assignValueById() 393 positionToId(StringSet<TString, Owner<TSpec> > &, in positionToId() 406 positionToId(StringSet<TString, Owner<TSpec> > const &, in positionToId() 419 idToPosition(StringSet<TString, Owner<TSpec> > const&, in idToPosition() [all …]
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H A D | string_set_dependent_generous.h | 154 StringSet<TString, Dependent<Generous> > & me, in appendValue() 168 StringSet<TString, Dependent<Generous> > & me, in insertValue() 194 inline void clear(StringSet<TString, Dependent<Generous> > & me) in clear() 207 length(StringSet<TString, Dependent<Generous> > & me) in length() 214 length(StringSet<TString, Dependent<Generous> > const & me) in length() 225 value(StringSet<TString, Dependent<Generous> >& me, TPos pos) in value() 251 getValueById(StringSet<TString, Dependent<Generous> >& me, in getValueById() 266 assignValueById(StringSet<TString, Dependent<Generous> >& me, in assignValueById() 304 positionToId(StringSet<TString, Dependent<Generous> >& me, in positionToId() 312 positionToId(StringSet<TString, Dependent<Generous> > const& me, in positionToId() [all …]
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H A D | string_set_dependent_tight.h | 168 StringSet(StringSet<TString, Owner<TDefault> > const & _other) : in StringSet() function 210 StringSet<TString, Dependent<Tight> > & me, in appendValue() 228 inline void clear(StringSet<TString, Dependent<Tight> >& me) in clear() 245 value(StringSet<TString, Dependent<Tight> >& me, TPos pos) in value() 252 value(StringSet<TString, Dependent<Tight> >const & me, TPos pos) in value() 263 getValueById(StringSet<TString, Dependent<Tight> > & me, in getValueById() 276 assignValueById(StringSet<TString, Dependent<Tight> >& me, in assignValueById() 287 assignValueById(StringSet<TString, Dependent<Tight> >& me, in assignValueById() 344 positionToId(StringSet<TString, Dependent<Tight> > & me, in positionToId() 352 positionToId(StringSet<TString, Dependent<Tight> > const & me, in positionToId() [all …]
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/dports/biology/seqan/seqan-library-2.4.0/include/seqan/sequence/ |
H A D | string_set_owner.h | 102 StringSet(String<TString, TOtherSpec> const & other) : in StringSet() 164 StringSet<TString, Owner<Default> > & me, in appendValue() 183 StringSet<TString, Owner<TSpec> > & me, in assignValue() 210 StringSet<TString, Owner<TSpec> > & me, in insertValue() 226 StringSet<TString, Owner<> > & target, in replace() 333 getValueById(StringSet<TString, Owner<TSpec> >& me, in getValueById() 358 assignValueById(StringSet<TString, Owner<TSpec> > & me, in assignValueById() 393 positionToId(StringSet<TString, Owner<TSpec> > &, in positionToId() 406 positionToId(StringSet<TString, Owner<TSpec> > const &, in positionToId() 419 idToPosition(StringSet<TString, Owner<TSpec> > const&, in idToPosition() [all …]
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H A D | string_set_dependent_generous.h | 154 StringSet<TString, Dependent<Generous> > & me, in appendValue() 168 StringSet<TString, Dependent<Generous> > & me, in insertValue() 194 inline void clear(StringSet<TString, Dependent<Generous> > & me) in clear() 207 length(StringSet<TString, Dependent<Generous> > & me) in length() 214 length(StringSet<TString, Dependent<Generous> > const & me) in length() 225 value(StringSet<TString, Dependent<Generous> >& me, TPos pos) in value() 251 getValueById(StringSet<TString, Dependent<Generous> >& me, in getValueById() 266 assignValueById(StringSet<TString, Dependent<Generous> >& me, in assignValueById() 304 positionToId(StringSet<TString, Dependent<Generous> >& me, in positionToId() 312 positionToId(StringSet<TString, Dependent<Generous> > const& me, in positionToId() [all …]
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H A D | string_set_dependent_tight.h | 168 StringSet(StringSet<TString, Owner<TDefault> > const & _other) : in StringSet() function 210 StringSet<TString, Dependent<Tight> > & me, in appendValue() 228 inline void clear(StringSet<TString, Dependent<Tight> >& me) in clear() 245 value(StringSet<TString, Dependent<Tight> >& me, TPos pos) in value() 252 value(StringSet<TString, Dependent<Tight> >const & me, TPos pos) in value() 263 getValueById(StringSet<TString, Dependent<Tight> > & me, in getValueById() 276 assignValueById(StringSet<TString, Dependent<Tight> >& me, in assignValueById() 287 assignValueById(StringSet<TString, Dependent<Tight> >& me, in assignValueById() 344 positionToId(StringSet<TString, Dependent<Tight> > & me, in positionToId() 352 positionToId(StringSet<TString, Dependent<Tight> > const & me, in positionToId() [all …]
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/dports/biology/seqan1/seqan-1.3.1/seqan/sequence/ |
H A D | string_set_dependent_generous.h | 77 StringSet(StringSet<TString, Owner<TDefault> > const& _other) in StringSet() function 119 StringSet<TString, Dependent<Generous> > & me, in appendValue() 133 inline void clear(StringSet<TString, Dependent<Generous> > & me) in clear() 147 value(StringSet<TString, Dependent<Generous> >& me, TPos pos) in value() 159 value(StringSet<TString, Dependent<Generous> > const & me, TPos pos) in value() 175 getValueById(StringSet<TString, Dependent<Generous> >& me, in getValueById() 191 assignValueById(StringSet<TString, Dependent<Generous> >& me, in assignValueById() 212 removeValueById(StringSet<TString, Dependent<Generous> >& me, TId const id) in removeValueById() 231 positionToId(StringSet<TString, Dependent<Generous> >& me, in positionToId() 240 positionToId(StringSet<TString, Dependent<Generous> > const& me, in positionToId() [all …]
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H A D | string_set_owner.h | 126 StringSet<TString, Owner<Default> > & me, in appendValue() 141 StringSet<TString, Owner<TSpec> > & me, in assignValue() 166 inline void clear(StringSet<TString, Owner<Default> > & me) in clear() 180 value(StringSet<TString, Owner<Default> > & me, TPos pos) in value() 187 value(StringSet<TString, Owner<Default> > const & me, TPos pos) in value() 198 getValueById(StringSet<TString, Owner<TSpec> >& me, in getValueById() 213 assignValueById(StringSet<TString, Owner<TSpec> > & me, in assignValueById() 234 removeValueById(StringSet<TString, Owner<TSpec> > & me, TId const id) in removeValueById() 248 positionToId(StringSet<TString, Owner<TSpec> > &, in positionToId() 261 positionToId(StringSet<TString, Owner<TSpec> > const &, in positionToId() [all …]
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H A D | string_set_dependent_tight.h | 101 StringSet(StringSet<TString, Owner<TDefault> > const & _other) in StringSet() function 144 StringSet<TString, Dependent<Tight> > & me, in appendValue() 163 inline void clear(StringSet<TString, Dependent<Tight> >& me) in clear() 181 value(StringSet<TString, Dependent<Tight> >& me, TPos pos) in value() 189 value(StringSet<TString, Dependent<Tight> >const & me, TPos pos) in value() 200 getValueById(StringSet<TString, Dependent<Tight> > & me, in getValueById() 213 assignValueById(StringSet<TString, Dependent<Tight> >& me, in assignValueById() 225 assignValueById(StringSet<TString, Dependent<Tight> >& me, in assignValueById() 285 positionToId(StringSet<TString, Dependent<Tight> > & me, in positionToId() 294 positionToId(StringSet<TString, Dependent<Tight> > const & me, in positionToId() [all …]
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/dports/devel/liteide/liteide-x37.4/liteidex/src/libgopher/ |
H A D | libgopher.go | 67 func Setenv(ck *C.TString, cv *C.TString) { 72 func SetBuildEnv(ck *C.TString, cv *C.TString) { 91 func InvokeAsync(cid *C.TString, cargs *C.TString, csep *C.TString, csin *C.TString, ctx unsafe.Poi…
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/sequence/ |
H A D | test_segment_beta.h | 552 void testSegmentLess(TString & /*Tag*/) in testSegmentLess() argument 792 void testSegmentEqual(TString & /*Tag*/) in testSegmentEqual() argument 1130 void testSegmentBegin(TString & /*Tag*/) in testSegmentBegin() argument 1223 void testSegmentClear(TString & /*Tag*/) in testSegmentClear() argument 1253 void testSegmentEnd(TString & /*Tag*/) in testSegmentEnd() argument 1348 void testSegmentFront(TString & /*Tag*/) in testSegmentFront() argument 1460 void testSegmentIter(TString & /*Tag*/) in testSegmentIter() argument 1530 void testSegmentLength(TString & /*Tag*/) in testSegmentLength() argument 1676 void testSegmentResize(TString & /*Tag*/) in testSegmentResize() argument 1715 void testSegmentSwap(TString & /*Tag*/) in testSegmentSwap() argument [all …]
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H A D | test_sequence.h | 161 typedef TAlphabetSpecPair_ TString; typedef 294 void testSequenceLess(TString & /*Tag*/) in testSequenceLess() argument 565 void testSequenceEqual(TString & /*Tag*/) in testSequenceEqual() argument 802 void testSequenceSwap(TString & /*Tag*/) in testSequenceSwap() argument 1054 void testSequenceBack(TString & /*Tag*/) in testSequenceBack() argument 1094 void testSequenceBegin(TString & /*Tag*/) in testSequenceBegin() argument 1184 void testSequenceClear(TString & /*Tag*/) in testSequenceClear() argument 1215 void testSequenceEnd(TString & /*Tag*/) in testSequenceEnd() argument 1288 void testSequenceErase(TString & /*Tag*/) in testSequenceErase() argument 1363 void testSequenceFront(TString & /*Tag*/) in testSequenceFront() argument [all …]
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/journaled_set/ |
H A D | journaled_set_join.h | 75 join(StringSet<TString, Owner<JournaledSet> > & journalSet, in join() 93 join(StringSet<TString, Owner<JournaledSet> > & journalSet, in join() 113 join(StringSet<TString, Owner<JournaledSet> > & journalSet, in join() 122 join(StringSet<TString, Owner<JournaledSet> > & journalSet, in join()
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/dports/biology/seqan/seqan-library-2.4.0/include/seqan/journaled_set/ |
H A D | journaled_set_join.h | 75 join(StringSet<TString, Owner<JournaledSet> > & journalSet, in join() 93 join(StringSet<TString, Owner<JournaledSet> > & journalSet, in join() 113 join(StringSet<TString, Owner<JournaledSet> > & journalSet, in join() 122 join(StringSet<TString, Owner<JournaledSet> > & journalSet, in join()
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/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/journaled_set/ |
H A D | journaled_set_join.h | 75 join(StringSet<TString, Owner<JournaledSet> > & journalSet, in join() 93 join(StringSet<TString, Owner<JournaledSet> > & journalSet, in join() 113 join(StringSet<TString, Owner<JournaledSet> > & journalSet, in join() 122 join(StringSet<TString, Owner<JournaledSet> > & journalSet, in join()
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/modifier/ |
H A D | test_modifier_string.h | 48 typedef seqan::Dna5String TString; in SEQAN_DEFINE_TEST() typedef 128 typedef seqan::Dna5String TString; in SEQAN_DEFINE_TEST() typedef 224 typedef Dna5String TString; in SEQAN_DEFINE_TEST() typedef 275 typedef seqan::CharString TString; in SEQAN_DEFINE_TEST() typedef 307 typedef seqan::CharString TString; in SEQAN_DEFINE_TEST() typedef 343 typedef seqan::CharString TString; in SEQAN_DEFINE_TEST() typedef 436 typedef seqan::CharString TString; in SEQAN_DEFINE_TEST() typedef 451 typedef seqan::CharString TString; in SEQAN_DEFINE_TEST() typedef 468 typedef seqan::CharString TString; in SEQAN_DEFINE_TEST() typedef 484 typedef CharString TString; in SEQAN_DEFINE_TEST() typedef [all …]
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/align/ |
H A D | test_align_gaps.h | 57 typedef Dna5String TString; in testAlignGapsMetafunctions() typedef 92 typedef Dna5String TString; in testAlignGapsConstructorAndSource() typedef 124 typedef Dna5String TString; in testAlignGapsSetSource() typedef 160 typedef Dna5String TString; in testAlignGapsAssignSource() typedef 187 typedef Dna5String TString; in testAlignGapsGapOperationsGapCenter() typedef 389 typedef Dna5String TString; in testAlignGapsGapOperationsGapsLeading() typedef 573 typedef Dna5String TString; in testAlignGapsGapOperationsGapsTrailing() typedef 792 typedef Dna5String TString; in testAlignGapsSequenceInterfaceGapsTrailing() typedef 896 typedef Dna5String TString; in testAlignGapsSourceViewPositionUngapped() typedef 927 typedef Dna5String TString; in testAlignGapsSourceViewPositionGapsCenter() typedef [all …]
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H A D | test_align_gaps_iterator.h | 51 typedef Dna5String TString; in testAlignGapsIteratorMetafunctions() typedef 74 typedef Dna5String TString; in testAlignGapsIteratorTrivialIteratorFunctions() typedef 93 typedef Dna5String TString; in testAlignGapsIteratorRootedRandomAccessIteratorFunctions() typedef 156 typedef Dna5String TString; in testAlignGapsIteratorMovement() typedef 291 typedef Dna5String TString; in testAlignGapsIteratorRelations() typedef 328 typedef Dna5String TString; in testAlignGapsIteratorPointerArithmetic() typedef 355 typedef Dna5String TString; in testAlignGapsIteratorForwardIteration() typedef 385 typedef Dna5String TString; in testAlignGapsIteratorReverseIteration() typedef 417 typedef Dna5String TString; in testAlignGapsIteratorCountGapsCountCharactersIsGap() typedef 516 typedef Dna5String TString; in testAlignGapsIteratorClippedCountGapsCountCharactersIsGap() typedef [all …]
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/dports/sysutils/zoxide/zoxide-0.6.0/cargo-crates/os_str_bytes-2.4.0/src/ |
H A D | raw.rs | 49 pub fn ends_with<TString>(string: &TString, suffix: &[u8]) -> bool in ends_with() 85 pub fn starts_with<TString>(string: &TString, prefix: &[u8]) -> bool in starts_with()
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/dports/databases/ods2sql/ods2sql-aca63183274038487cecb6be17d7f65e92178b8c/cargo-crates/os_str_bytes-2.3.2/src/ |
H A D | raw.rs | 49 pub fn ends_with<TString>(string: &TString, suffix: &[u8]) -> bool in ends_with() 85 pub fn starts_with<TString>(string: &TString, prefix: &[u8]) -> bool in starts_with()
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/index/ |
H A D | test_index_creation.h | 54 typedef String<AminoAcid> TString; in SEQAN_DEFINE_TEST() typedef 67 typedef String<AminoAcid> TString; in SEQAN_DEFINE_TEST() typedef 80 typedef String<AminoAcid> TString; in SEQAN_DEFINE_TEST() typedef 93 typedef String<AminoAcid> TString; in SEQAN_DEFINE_TEST() typedef
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/dports/biology/seqan1/seqan-1.3.1/seqan/graph_msa/ |
H A D | graph_align_tcoffee_library.h | 109 selectPairs(StringSet<TString, TSpec> const& str, in selectPairs() 150 typedef typename Value<TStringSet>::Type TString; in getAlignmentStatistics() typedef 204 appendSegmentMatches(StringSet<TString, Dependent<TSpec> > const& str, in appendSegmentMatches() 252 appendSegmentMatches(StringSet<TString, Dependent<TSpec> > const& str, in appendSegmentMatches() 312 appendSegmentMatches(StringSet<TString, Dependent<TSpec> > const& str, in appendSegmentMatches() 326 appendSegmentMatches(StringSet<TString, Dependent<TSpec> > const& str, in appendSegmentMatches() 340 appendSegmentMatches(StringSet<TString, Dependent<TSpec> > const& str, in appendSegmentMatches() 406 StringSet<TString, TSpec2>& pairSet, in _setDistanceValue() 435 StringSet<TString, TSpec2>& pairSet, in _setDistanceValue() 462 StringSet<TString, TSpec2>&, in _setDistanceValue() [all …]
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