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Searched defs:TracebackVectorMatrix (Results 1 – 2 of 2) sorted by relevance

/dports/biology/diamond/diamond-2.0.13/src/dp/swipe/
H A Dfull_matrix.h101 struct TracebackVectorMatrix struct
103 typedef typename ::DISPATCH_ARCH::ScoreTraits<_sv>::TraceMask TraceMask;
104 typedef void* Stat;
105 struct ColumnIterator
147 struct TracebackIterator
209 TracebackVectorMatrix(int rows, int cols) : in TracebackVectorMatrix() function
220 inline ColumnIterator begin(int col) in begin()
225 void set_zero(int c) in set_zero()
254 template<typename _sv> thread_local MemBuffer<_sv> TracebackVectorMatrix<_sv>::hgap_; argument
H A Dbanded_matrix.h274 struct TracebackVectorMatrix struct
276 typedef typename ::DISPATCH_ARCH::ScoreTraits<_sv>::TraceMask TraceMask;
277 typedef void* Stat;
278 struct ColumnIterator
320 struct TracebackIterator
374 TracebackVectorMatrix(int band, size_t cols) : in TracebackVectorMatrix() argument
384 inline ColumnIterator begin(int offset, int col) in begin()
410 template<typename _sv> thread_local MemBuffer<_sv> TracebackVectorMatrix<_sv>::hgap_; argument