Searched defs:aliLen (Results 1 – 8 of 8) sorted by relevance
66 mutable int aliLen; variable
88 int aliLen = msa->getLength(); in updateCache() local
164 _analyzeAlignment(TRow const & row0, TRow const & row1, TSize & aliLen, TSize & matches) { in _analyzeAlignment()189 TSize matches, aliLen; in _computeIdentity() local205 TSize matches, aliLen; in _computeEValue() local
167 const int aliLen = inputMsa->getLength(); in run() local
124 const int aliLen = editor->getMaObject()->getLength(); in updateView() local
48 int aliLen = ma->getLength(); in updateConsensus() local
227 int aliLen = msa->getLength(); in storeTextEntry() local
89 int aliLen = ma->getLength(); in MuscleTask() local