Searched defs:alignmentData (Results 1 – 2 of 2) sorted by relevance
/dports/biology/iqtree/IQ-TREE-2.0.6/pll/ |
H A D | alignment.c | 121 pllAlignmentData * alignmentData; in pllInitAlignmentData() local 161 pllAlignmentDataDestroy (pllAlignmentData * alignmentData) in pllAlignmentDataDestroy() 184 pllAlignmentDataDumpConsole (pllAlignmentData * alignmentData) in pllAlignmentDataDumpConsole() 197 static void dump_fasta_content(FILE * fp, pllAlignmentData * alignmentData) in dump_fasta_content() 205 static void dump_phylip_content(FILE * fp, pllAlignmentData * alignmentData) in dump_phylip_content() 233 pllAlignmentDataDumpFile (pllAlignmentData * alignmentData, int fileFormat, const char * filename) in pllAlignmentDataDumpFile() 308 parse_phylip (pllAlignmentData * alignmentData, int input) in parse_phylip() 420 pllAlignmentData * alignmentData; in pllParsePHYLIP() local 472 pllAlignmentData * alignmentData; in pllParsePHYLIPString() local 591 parseFastaAlignment (pllAlignmentData * alignmentData, int input) in parseFastaAlignment() [all …]
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H A D | utils.c | 1030 pllPartitionsValidate (pllQueue * parts, pllAlignmentData * alignmentData) in pllPartitionsValidate() 1238 partitionList * pllPartitionsCommit (pllQueue * parts, pllAlignmentData * alignmentData) in pllPartitionsCommit() 1350 pllAlignmentRemoveDups (pllAlignmentData * alignmentData, partitionList * pl) in pllAlignmentRemoveDups() 1472 pllAlignmentData * alignmentData, in genericBaseFrequenciesAlignment() 1732 double ** pllBaseFrequenciesAlignment (pllAlignmentData * alignmentData, partitionList * pl) in pllBaseFrequenciesAlignment() 1832 int pllLoadAlignment (pllInstance * tr, pllAlignmentData * alignmentData, partitionList * partition… in pllLoadAlignment() 2448 pllTreeInitTopologyForAlignment (pllInstance * tr, pllAlignmentData * alignmentData) in pllTreeInitTopologyForAlignment()
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