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Searched defs:alignmentData (Results 1 – 2 of 2) sorted by relevance

/dports/biology/iqtree/IQ-TREE-2.0.6/pll/
H A Dalignment.c121 pllAlignmentData * alignmentData; in pllInitAlignmentData() local
161 pllAlignmentDataDestroy (pllAlignmentData * alignmentData) in pllAlignmentDataDestroy()
184 pllAlignmentDataDumpConsole (pllAlignmentData * alignmentData) in pllAlignmentDataDumpConsole()
197 static void dump_fasta_content(FILE * fp, pllAlignmentData * alignmentData) in dump_fasta_content()
205 static void dump_phylip_content(FILE * fp, pllAlignmentData * alignmentData) in dump_phylip_content()
233 pllAlignmentDataDumpFile (pllAlignmentData * alignmentData, int fileFormat, const char * filename) in pllAlignmentDataDumpFile()
308 parse_phylip (pllAlignmentData * alignmentData, int input) in parse_phylip()
420 pllAlignmentData * alignmentData; in pllParsePHYLIP() local
472 pllAlignmentData * alignmentData; in pllParsePHYLIPString() local
591 parseFastaAlignment (pllAlignmentData * alignmentData, int input) in parseFastaAlignment()
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H A Dutils.c1030 pllPartitionsValidate (pllQueue * parts, pllAlignmentData * alignmentData) in pllPartitionsValidate()
1238 partitionList * pllPartitionsCommit (pllQueue * parts, pllAlignmentData * alignmentData) in pllPartitionsCommit()
1350 pllAlignmentRemoveDups (pllAlignmentData * alignmentData, partitionList * pl) in pllAlignmentRemoveDups()
1472 pllAlignmentData * alignmentData, in genericBaseFrequenciesAlignment()
1732 double ** pllBaseFrequenciesAlignment (pllAlignmentData * alignmentData, partitionList * pl) in pllBaseFrequenciesAlignment()
1832 int pllLoadAlignment (pllInstance * tr, pllAlignmentData * alignmentData, partitionList * partition… in pllLoadAlignment()
2448 pllTreeInitTopologyForAlignment (pllInstance * tr, pllAlignmentData * alignmentData) in pllTreeInitTopologyForAlignment()