Searched defs:alignment_masks (Results 1 – 1 of 1) sorted by relevance
2814 int calc_junctions_from_cigarInts(fc_thread_global_context_t * global_context, int alignment_masks … in calc_junctions_from_cigarInts()2838 int alignment_masks, mapping_qual, NH_value; in process_line_junctions() local3184 int nhits1 = 0, nhits2 = 0, alignment_masks, search_block_id, search_item_id, mapping_qual; in process_line_buffer() local