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Searched defs:atomSpec (Results 1 – 6 of 6) sorted by relevance

/dports/biology/jalview/jalview/src/ext/edu/ucsf/rbvi/strucviz2/
H A DChimUtils.java212 public static ChimeraModel getModel(String atomSpec, in getModel()
252 public static ChimeraResidue getResidue(String atomSpec, in getResidue()
267 public static ChimeraResidue getResidue(String atomSpec, in getResidue()
290 public static ChimeraChain getChain(String atomSpec, ChimeraModel model) in getChain()
304 public static String getAtomName(String atomSpec) in getAtomName()
/dports/biology/jalview/jalview/src/jalview/ext/rbvi/chimera/
H A DAtomSpecModel.java54 private Map<Integer, Map<String, List<int[]>>> atomSpec; field in AtomSpecModel
H A DChimeraCommands.java307 AtomSpecModel atomSpec = map.get(value); in addAtomSpecRange() local
H A DJalviewChimeraBinding.java1217 String atomSpec = tokens[2]; in createFeaturesForAttributes() local
/dports/biology/jalview/jalview/src/jalview/structure/
H A DStructureSelectionManager.java867 AtomSpec atomSpec = new AtomSpec(pdbfile, chain, pdbResNum, 0); in mouseOverStructure() local
/dports/science/jmol/jmol-14.32.7/src/org/jmol/modelset/
H A DAtomCollection.java2319 String atomSpec = ((String) specInfo).toUpperCase(); in getAtomBitsMDa() local