Searched defs:bandExtension (Results 1 – 3 of 3) sorted by relevance
| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/seeds/ |
| H A D | banded_chain_alignment_impl.h | 134 …l _isCrossingBeginHorizontal(TPosition const & horizontalSeedBeginPos, TSize const & bandExtension) in _isCrossingBeginHorizontal()
148 … bool _isCrossingBeginVertical(TPosition const & verticalSeedBeginPos, TSize const & bandExtension) in _isCrossingBeginVertical()
665 _findFirstAnchor(TSeedSet const & seedSet, int bandExtension) in _findFirstAnchor()
701 … TSeedSet const & seedSet, TSequenceH const & seqH, TSequenceV const & seqV, int bandExtension) in _findLastAnchor()
814 unsigned bandExtension, in _initializeBandedChain()
975 unsigned bandExtension, in _computeGapArea()
1037 unsigned bandExtension, in _computeAnchorArea()
1110 unsigned bandExtension, in _finishBandedChain()
1284 unsigned bandExtension, in _computeAlignment()
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| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/seeds/ |
| H A D | banded_chain_alignment_impl.h | 134 …l _isCrossingBeginHorizontal(TPosition const & horizontalSeedBeginPos, TSize const & bandExtension) in _isCrossingBeginHorizontal()
148 … bool _isCrossingBeginVertical(TPosition const & verticalSeedBeginPos, TSize const & bandExtension) in _isCrossingBeginVertical()
665 _findFirstAnchor(TSeedSet const & seedSet, int bandExtension) in _findFirstAnchor()
701 … TSeedSet const & seedSet, TSequenceH const & seqH, TSequenceV const & seqV, int bandExtension) in _findLastAnchor()
814 unsigned bandExtension, in _initializeBandedChain()
975 unsigned bandExtension, in _computeGapArea()
1037 unsigned bandExtension, in _computeAnchorArea()
1110 unsigned bandExtension, in _finishBandedChain()
1284 unsigned bandExtension, in _computeAlignment()
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| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/seeds/ |
| H A D | banded_chain_alignment_impl.h | 118 …l _isCrossingBeginHorizontal(TPosition const & horizontalSeedBeginPos, TSize const & bandExtension) in _isCrossingBeginHorizontal()
132 … bool _isCrossingBeginVertical(TPosition const & verticalSeedBeginPos, TSize const & bandExtension) in _isCrossingBeginVertical()
584 _findFirstAnchor(TSeedSet const & seedSet, int bandExtension) in _findFirstAnchor()
620 … TSeedSet const & seedSet, TSequenceH const & seqH, TSequenceV const & seqV, int bandExtension) in _findLastAnchor()
726 unsigned bandExtension, in _initializeBandedChain()
885 unsigned bandExtension, in _computeGapArea()
944 unsigned bandExtension, in _computeAnchorArea()
1016 unsigned bandExtension, in _finishBandedChain()
1189 unsigned bandExtension, in _computeAlignment()
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