| /dports/science/jmol/jmol-14.32.7/src/org/jmol/adapter/readers/simple/ |
| H A D | JmeReader.java | 73 int bondCount = parseInt(); in initializeReader() local
108 private void readBonds(int bondCount) throws Exception { in readBonds()
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| H A D | HyperChemReader.java | 104 int bondCount = parseInt(); in processAtom() local
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| H A D | AlchemyReader.java | 53 private int bondCount; field in AlchemyReader
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| H A D | GhemicalMMReader.java | 127 int bondCount = parseIntAt(line, 6); in processBonds() local
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| /dports/science/jmol/jmol-14.32.7/src/org/jmol/modelset/ |
| H A D | BondIteratorSelected.java | 35 private int bondCount; field in BondIteratorSelected
41 BondIteratorSelected(Bond[] bonds, int bondCount, int bondType, in BondIteratorSelected()
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| H A D | Model.java | 128 private int bondCount = -1; field in Model
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| /dports/science/cdk/cdk-cdk-2.3/descriptor/qsarmolecular/src/main/java/org/openscience/cdk/qsar/descriptors/molecular/ |
| H A D | BondCountDescriptor.java | 139 int bondCount = 0; in calculate() local
155 int bondCount = 0; in calculate() local
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| /dports/science/cdk/cdk-cdk-2.3/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/matchers/ |
| H A D | QueryAtomContainer.java | 85 protected int bondCount; field in QueryAtomContainer
184 …public QueryAtomContainer(int atomCount, int bondCount, int lpCount, int seCount, IChemObjectBuild… in QueryAtomContainer()
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| /dports/science/jmol/jmol-14.32.7/src/org/jmol/adapter/readers/more/ |
| H A D | Mol2Reader.java | 112 int bondCount = parseInt(); in processMolecule() local
270 private void readBonds(int bondCount) throws Exception { in readBonds()
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| /dports/science/cdk/cdk-cdk-2.3/base/silent/src/main/java/org/openscience/cdk/silent/ |
| H A D | AtomContainer.java | 88 protected int bondCount; field in AtomContainer
185 public AtomContainer(int atomCount, int bondCount, int lpCount, in AtomContainer()
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| /dports/science/cdk/cdk-cdk-2.3/base/data/src/main/java/org/openscience/cdk/ |
| H A D | AtomContainer.java | 86 protected int bondCount; field in AtomContainer
187 public AtomContainer(int atomCount, int bondCount, int lpCount, in AtomContainer()
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| /dports/science/cdk/cdk-cdk-2.3/tool/group/src/main/java/org/openscience/cdk/group/ |
| H A D | BondRefinable.java | 109 int bondCount = atomContainer.getBondCount(); in getInitialPartition() local
157 int bondCount = atomContainer.getBondCount(); in setupConnectionTable() local
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| /dports/science/jmol/jmol-14.32.7/src/org/jmol/adapter/smarter/ |
| H A D | BondIterator.java | 35 private int bondCount; field in BondIterator
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| /dports/science/cdk/cdk-cdk-2.3/tool/structgen/src/test/java/org/openscience/cdk/structgen/ |
| H A D | SingleStructureRandomGeneratorTest.java | 72 double bondCount = 0; in fixCarbonHCount() local
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| /dports/science/py-avogadrolibs/avogadrolibs-1.94.0/avogadro/protocall/ |
| H A D | moleculedeserializer.cpp | 132 uint32 bondCount; in deserializeBondPairs() local
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| /dports/science/avogadrolibs/avogadrolibs-1.94.0/avogadro/protocall/ |
| H A D | moleculedeserializer.cpp | 132 uint32 bondCount; in deserializeBondPairs() local
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| /dports/science/cdk/cdk-cdk-2.3/base/test-standard/src/test/java/org/openscience/cdk/tools/manipulator/ |
| H A D | ChemFileManipulatorTest.java | 153 int bondCount = 0; in testGetAllChemObjects_IChemFile() local
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| /dports/science/jmol/jmol-14.32.7/src/org/jmol/adapter/readers/molxyz/ |
| H A D | V3000Rdr.java | 100 private void readBonds(int bondCount) throws Exception { in readBonds()
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| /dports/science/cdk/cdk-cdk-2.3/storage/io/src/main/java/org/openscience/cdk/io/ |
| H A D | Mol2Reader.java | 246 int bondCount = 0; in readMolecule() local
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| /dports/science/cdk/cdk-cdk-2.3/base/standard/src/main/java/org/openscience/cdk/tools/ |
| H A D | IDCreator.java | 67 private static int bondCount = 0; field in IDCreator
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| /dports/science/py-avogadrolibs/avogadrolibs-1.94.0/avogadro/qtgui/ |
| H A D | rwmolecule.h | 797 inline Index RWMolecule::bondCount() const in bondCount() function
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| /dports/science/avogadrolibs/avogadrolibs-1.94.0/avogadro/qtgui/ |
| H A D | rwmolecule.h | 797 inline Index RWMolecule::bondCount() const in bondCount() function
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| /dports/science/cdk/cdk-cdk-2.3/legacy/src/main/java/org/openscience/cdk/smsd/tools/ |
| H A D | ExtAtomContainerManipulator.java | 353 int bondCount = container.getBondCount(); in copyBonds() local
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| /dports/science/opsin/dan2097-opsin-9b25f7546b67/opsin-core/src/main/java/uk/ac/cam/ch/wwmm/opsin/ |
| H A D | FunctionalReplacement.java | 651 int bondCount = oxygen.getBondCount(); in performChalcogenFunctionalReplacement() local
663 int bondCount = oxygen.getBondCount(); in performChalcogenFunctionalReplacement() local
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| /dports/graphics/libbpg/libbpg-0.9.8/x265/source/common/ |
| H A D | threadpool.cpp | 209 int bondCount = 0; in tryBondPeers() local
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