| /dports/games/ivan/ivan-059/Main/Include/ |
| H A D | definesvalidator.h | 32 std::bitset<32> bsA, bsB; in Validate() local
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| /dports/science/jmol/jmol-14.32.7/src/org/jmol/jvxl/readers/ |
| H A D | IsoIntersectAtomReader.java | 88 BS bsA = params.intersection[0]; in setup() local
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| H A D | IsoIntersectReader.java | 88 BS bsA = params.intersection[0]; in setup() local
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| /dports/science/jmol/jmol-14.32.7/src/org/jmol/modelsetbio/ |
| H A D | NucleicPolymer.java | 94 public void calcRasmolHydrogenBonds(BioPolymer polymer, BS bsA, in calcRasmolHydrogenBonds()
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| H A D | BioModelSet.java | 71 public void calcAllRasmolHydrogenBonds(BS bsA, BS bsB, Lst<Bond> vHBonds, in calcAllRasmolHydrogenBonds()
460 BS bsA = new BS(); in getFullProteinStructureState() local
644 BS bsA = null; in getAllBasePairBits() local
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| H A D | AminoPolymer.java | 189 public void calcRasmolHydrogenBonds(BioPolymer polymer, BS bsA, BS bsB, in calcRasmolHydrogenBonds()
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| H A D | BioModel.java | 311 void getRasmolHydrogenBonds(BS bsA, BS bsB, Lst<Bond> vHBonds, in getRasmolHydrogenBonds()
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| H A D | BioPolymer.java | 484 public void calcRasmolHydrogenBonds(BioPolymer polymer, BS bsA, in calcRasmolHydrogenBonds()
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| /dports/science/jmol/jmol-14.32.7/src/org/jmol/modelset/ |
| H A D | Bond.java | 168 public void setAtropisomerOptions(BS bsA, BS bsB) { in setAtropisomerOptions()
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| H A D | ModelSet.java | 586 int connectOperation, BS bsA, BS bsB, in makeConnections()
2382 BS bsA = new BS(); in deleteBonds() local
2399 int connectOperation, BS bsA, BS bsB, in makeConnections2()
2537 public int autoBondBs4(BS bsA, BS bsB, BS bsExclude, BS bsBonds, short mad, in autoBondBs4()
2673 private int autoBond_Pre_11_9_24(BS bsA, BS bsB, BS bsExclude, BS bsBonds, in autoBond_Pre_11_9_24()
2768 public int autoHbond(BS bsA, BS bsB, boolean onlyIfHaveCalculated) { in autoHbond()
3988 public void calcRasmolHydrogenBonds(BS bsA, BS bsB, Lst<Bond> vHBonds, in calcRasmolHydrogenBonds()
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| H A D | BondCollection.java | 249 BS bsA, BS bsB, boolean isBonds, in deleteConnections()
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| /dports/science/jmol/jmol-14.32.7/src/org/jmol/api/ |
| H A D | JmolPropertyManager.java | 40 String getPdbData(int modelIndex, String type, BS bsA, Object[] parameters, in getPdbData()
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| /dports/science/jmol/jmol-14.32.7/src/org/jmol/shapesurface/ |
| H A D | Contact.java | 119 BS bsA = (BS) value[4]; in setContacts() local
396 private Lst<ContactPair> getPairs(BS bsA, BS bsB, RadiusData rd, in getPairs()
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| /dports/science/jmol/jmol-14.32.7/src/org/jmol/scriptext/ |
| H A D | SmilesExt.java | 78 public float getSmilesCorrelation(BS bsA, BS bsB, String smiles, Lst<P3> ptsA, in getSmilesCorrelation()
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| H A D | IsoExt.java | 3309 BS bsA = null; in contact() local
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| H A D | MathExt.java | 4256 public BS setContactBitSets(BS bsA, BS bsB, boolean localOnly, float distance, in setContactBitSets()
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| /dports/science/jmol/jmol-14.32.7/src/org/jmol/quantum/ |
| H A D | NMRCalculation.java | 119 private Lst<Tensor> getInteractionTensorList(String type, BS bsA) { in getInteractionTensorList()
149 private BS getAtomSiteBS(BS bsA) { in getAtomSiteBS()
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| /dports/science/jmol/jmol-14.32.7/src/org/jmol/script/ |
| H A D | ScriptManager.java | 750 BS bsA = vwr.getModelUndeletedAtomsBitSet(modelIndex); in addHydrogensInline() local
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| /dports/science/jmol/jmol-14.32.7/src/org/jmol/symmetry/ |
| H A D | CIPChirality.java | 2354 BS bsA = getBetter4bList(); in compareRule4b5() local
2544 private BS compareLikeUnlike(BS bsA, BS bsB) { in compareLikeUnlike()
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| /dports/science/jmol/jmol-14.32.7/src/org/jmol/util/ |
| H A D | MeshSlicer.java | 175 BS bsA = (bs == null ? null : BSUtil.copy(m.bsSlabDisplay)); in slabPolygons() local
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| /dports/databases/sfcgal/SFCGAL-815d5097f684dbc48b22041bf2047beab36df0a1/src/algorithm/ |
| H A D | distance3d.cpp | 596 std::vector<Sphere> bsA; in distanceGeometryCollectionToGeometry3D() local
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| /dports/science/jmol/jmol-14.32.7/src/org/jmol/smiles/ |
| H A D | SmilesSearch.java | 389 …void setRingData(BS bsA, Lst<BS>[] vRings, boolean doProcessAromatic) throws InvalidSmilesExceptio… in setRingData()
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| /dports/science/jmol/jmol-14.32.7/src/org/jmol/modelkit/ |
| H A D | ModelKitPopup.java | 1045 BS bsA = BSUtil.newAndSetBit(atomIndex); in assignAtom() local
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| /dports/science/jmol/jmol-14.32.7/src/org/jmol/viewer/ |
| H A D | Viewer.java | 2397 public BS bsA() { in bsA() method in Viewer
7482 int connectOperation, BS bsA, BS bsB, BS bsBonds, in makeConnections()
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