| /dports/biology/bcftools/bcftools-1.14/ |
| H A D | bam_sample.c | 60 bam_smpl_t *bsmpl; in bam_smpl_init() local
66 void bam_smpl_destroy(bam_smpl_t *bsmpl) in bam_smpl_destroy()
85 void bam_smpl_ignore_readgroups(bam_smpl_t* bsmpl) in bam_smpl_ignore_readgroups()
90 static void bsmpl_add_readgroup(bam_smpl_t *bsmpl, file_t *file, const char *rg_id, const char *smp… in bsmpl_add_readgroup()
114 static int bsmpl_keep_readgroup(bam_smpl_t *bsmpl, file_t *file, const char *rg_id, const char **sm… in bsmpl_keep_readgroup()
151 int bam_smpl_add_bam(bam_smpl_t *bsmpl, char *bam_hdr, const char *fname) in bam_smpl_add_bam()
257 const char **bam_smpl_get_samples(bam_smpl_t *bsmpl, int *nsmpl) in bam_smpl_get_samples()
263 int bam_smpl_get_sample_id(bam_smpl_t *bsmpl, int bam_id, bam1_t *bam_rec) in bam_smpl_get_sample_id()
277 int bam_smpl_add_samples(bam_smpl_t *bsmpl, char *list, int is_file) in bam_smpl_add_samples()
324 int bam_smpl_add_readgroups(bam_smpl_t *bsmpl, char *list, int is_file) in bam_smpl_add_readgroups()
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| H A D | mpileup.c | 95 bam_smpl_t *bsmpl; member
347 static void group_smpl(mplp_pileup_t *m, bam_smpl_t *bsmpl, int n, int *n_plp, const bam_pileup1_t … in group_smpl()
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| /dports/biology/bio-mocha/bcftools-1.14/ |
| H A D | bam_sample.c | 60 bam_smpl_t *bsmpl; in bam_smpl_init() local
66 void bam_smpl_destroy(bam_smpl_t *bsmpl) in bam_smpl_destroy()
85 void bam_smpl_ignore_readgroups(bam_smpl_t* bsmpl) in bam_smpl_ignore_readgroups()
90 static void bsmpl_add_readgroup(bam_smpl_t *bsmpl, file_t *file, const char *rg_id, const char *smp… in bsmpl_add_readgroup()
114 static int bsmpl_keep_readgroup(bam_smpl_t *bsmpl, file_t *file, const char *rg_id, const char **sm… in bsmpl_keep_readgroup()
151 int bam_smpl_add_bam(bam_smpl_t *bsmpl, char *bam_hdr, const char *fname) in bam_smpl_add_bam()
257 const char **bam_smpl_get_samples(bam_smpl_t *bsmpl, int *nsmpl) in bam_smpl_get_samples()
263 int bam_smpl_get_sample_id(bam_smpl_t *bsmpl, int bam_id, bam1_t *bam_rec) in bam_smpl_get_sample_id()
277 int bam_smpl_add_samples(bam_smpl_t *bsmpl, char *list, int is_file) in bam_smpl_add_samples()
324 int bam_smpl_add_readgroups(bam_smpl_t *bsmpl, char *list, int is_file) in bam_smpl_add_readgroups()
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| H A D | mpileup.c | 95 bam_smpl_t *bsmpl; member
347 static void group_smpl(mplp_pileup_t *m, bam_smpl_t *bsmpl, int n, int *n_plp, const bam_pileup1_t … in group_smpl()
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| /dports/biology/py-pysam/pysam-0.18.0/bcftools/ |
| H A D | bam_sample.c | 60 bam_smpl_t *bsmpl; in bam_smpl_init() local
66 void bam_smpl_destroy(bam_smpl_t *bsmpl) in bam_smpl_destroy()
85 void bam_smpl_ignore_readgroups(bam_smpl_t* bsmpl) in bam_smpl_ignore_readgroups()
90 static void bsmpl_add_readgroup(bam_smpl_t *bsmpl, file_t *file, const char *rg_id, const char *smp… in bsmpl_add_readgroup()
114 static int bsmpl_keep_readgroup(bam_smpl_t *bsmpl, file_t *file, const char *rg_id, const char **sm… in bsmpl_keep_readgroup()
151 int bam_smpl_add_bam(bam_smpl_t *bsmpl, char *bam_hdr, const char *fname) in bam_smpl_add_bam()
257 const char **bam_smpl_get_samples(bam_smpl_t *bsmpl, int *nsmpl) in bam_smpl_get_samples()
263 int bam_smpl_get_sample_id(bam_smpl_t *bsmpl, int bam_id, bam1_t *bam_rec) in bam_smpl_get_sample_id()
277 int bam_smpl_add_samples(bam_smpl_t *bsmpl, char *list, int is_file) in bam_smpl_add_samples()
324 int bam_smpl_add_readgroups(bam_smpl_t *bsmpl, char *list, int is_file) in bam_smpl_add_readgroups()
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| H A D | bam_sample.c.pysam.c | 62 bam_smpl_t *bsmpl; in bam_smpl_init() local
68 void bam_smpl_destroy(bam_smpl_t *bsmpl) in bam_smpl_destroy()
87 void bam_smpl_ignore_readgroups(bam_smpl_t* bsmpl) in bam_smpl_ignore_readgroups()
92 static void bsmpl_add_readgroup(bam_smpl_t *bsmpl, file_t *file, const char *rg_id, const char *smp… in bsmpl_add_readgroup()
116 static int bsmpl_keep_readgroup(bam_smpl_t *bsmpl, file_t *file, const char *rg_id, const char **sm… in bsmpl_keep_readgroup()
153 int bam_smpl_add_bam(bam_smpl_t *bsmpl, char *bam_hdr, const char *fname) in bam_smpl_add_bam()
259 const char **bam_smpl_get_samples(bam_smpl_t *bsmpl, int *nsmpl) in bam_smpl_get_samples()
265 int bam_smpl_get_sample_id(bam_smpl_t *bsmpl, int bam_id, bam1_t *bam_rec) in bam_smpl_get_sample_id()
279 int bam_smpl_add_samples(bam_smpl_t *bsmpl, char *list, int is_file) in bam_smpl_add_samples()
326 int bam_smpl_add_readgroups(bam_smpl_t *bsmpl, char *list, int is_file) in bam_smpl_add_readgroups()
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| H A D | mpileup.c | 95 bam_smpl_t *bsmpl; member
347 static void group_smpl(mplp_pileup_t *m, bam_smpl_t *bsmpl, int n, int *n_plp, const bam_pileup1_t … in group_smpl()
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| H A D | mpileup.c.pysam.c | 97 bam_smpl_t *bsmpl; member
349 static void group_smpl(mplp_pileup_t *m, bam_smpl_t *bsmpl, int n, int *n_plp, const bam_pileup1_t … in group_smpl()
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