| /dports/biology/mafft/mafft-7.267-without-extensions/core/ |
| H A D | fftFunctions.c | 130 void zurasu2( int lag, int clus1, int clus2, in zurasu2()
150 void zurasu( int lag, int clus1, int clus2, in zurasu()
171 int alignableReagion( int clus1, int clus2, in alignableReagion()
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| H A D | Falign.c | 199 int clus1, int clus2, in Fgetlag()
770 int clus1, int clus2, in Falign()
1624 int clus1, int clus2, in Falign_udpari_long()
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| H A D | getlag.c | 160 int clus1, clus2; in treebase() local
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| H A D | mafft-profile.c | 182 int clus1, clus2; in GroupAlign() local
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| H A D | Falign_localhom.c | 167 int clus1, int clus2, in Falign_localhom()
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| H A D | tbfast.c | 544 int clus1, clus2; in treebasethread() local
920 int clus1, clus2; in treebase() local
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| H A D | tditeration.c | 367 int clus1, clus2; in athread() local
1251 int clus1, clus2; local
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| H A D | disttbfast.c | 908 int clus1, clus2; in treebasethread() local
1303 int clus1, clus2; in treebase() local
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| H A D | partSalignmm.c | 103 void part_imp_match_init_strict( double *imp, int clus1, int clus2, int lgth1, int lgth2, char **se… in part_imp_match_init_strict()
278 void part_imp_match_init( double *imp, int clus1, int clus2, int lgth1, int lgth2, char **seq1, cha… in part_imp_match_init()
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| H A D | pairash.c | 1027 int clus1, clus2; in pairalign() local
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| H A D | mltaln9.c | 191 …eight( char **seq1, char **seq2, double *eff1, double *eff2, int clus1, int clus2, int len, double… in intergroup_score_consweight()
256 …pnomi( char **seq1, char **seq2, double *eff1, double *eff2, int clus1, int clus2, int len, double… in intergroup_score_gapnomi()
322 …rices, char **seq1, char **seq2, double *eff1, double *eff2, int clus1, int clus2, int len, double… in intergroup_score_multimtx()
400 …0x80], char **seq1, char **seq2, double *eff1, double *eff2, int clus1, int clus2, int len, double… in intergroup_score_dynmtx()
476 void intergroup_score( char **seq1, char **seq2, double *eff1, double *eff2, int clus1, int clus2, … in intergroup_score()
550 …e_new( char **seq1, char **seq2, double *eff1, double *eff2, int clus1, int clus2, int len, double… in intergroup_score_new()
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| H A D | splittbfast.c | 931 int clus1, clus2; in pairalign() local
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| H A D | tddis.c | 291 …**eff, double *effarr1, double *effarr2, char name1[M][B], char name2[M][B], int clus1, int clus2 ) in mseqcat()
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| H A D | Salignmm.c | 78 void imp_match_init_strict( double *imp, int clus1, int clus2, int lgth1, int lgth2, char **seq1, c… in imp_match_init_strict()
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| H A D | addsingle.c | 1156 int clus1, clus2; in treebase() local
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| H A D | Dalignmm.c | 118 void imp_match_init_strictD( double *imp, int clus1, int clus2, int lgth1, int lgth2, char **seq1, … in imp_match_init_strictD()
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| /dports/devel/ga/ga-5.8/armci/tcgmsg/ipcv4.0/ |
| H A D | pbegin.c | 88 long j, k, clus1, clus2, node1, node2, nslave1, nslave2; in ConnectAll() local
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| /dports/cad/xcircuit/xcircuit-3.10.30/asg/ |
| H A D | place.c | 61 static int clus1 = 0, clus2 = 0; variable
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