| /dports/biology/vt/vt-0.57721/lib/htslib/cram/ |
| H A D | cram_structs.h | 542 cram_block **block;
546 int last_apos, max_apos;
549 cram_record *crecs;
554 uint32_t *cigar;
556 uint32_t ncigar;
564 uint32_t *TN;
565 int nTN, aTN; // used and allocated size for TN[]
567 cram_block *tn_blk;
568 int tn_id;
572 cram_block *name_blk;
[all …]
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| /dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/cram/ |
| H A D | cram_structs.h | 542 cram_block **block;
546 int last_apos, max_apos;
549 cram_record *crecs;
554 uint32_t *cigar;
556 uint32_t ncigar;
564 uint32_t *TN;
565 int nTN, aTN; // used and allocated size for TN[]
567 cram_block *tn_blk;
568 int tn_id;
572 cram_block *name_blk;
[all …]
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| /dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/cram/ |
| H A D | cram_structs.h | 545 struct cram_slice { struct
552 int64_t last_apos, max_apos;
560 uint32_t *cigar;
562 uint32_t ncigar;
570 uint32_t *TN;
571 int nTN, aTN; // used and allocated size for TN[]
574 int tn_id;
591 int ref_id;
594 int naux_block;
598 int decode_md;
[all …]
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| /dports/biology/py-pysam/pysam-0.18.0/htslib/cram/ |
| H A D | cram_structs.h | 603 struct cram_slice { struct
610 int64_t last_apos, max_apos;
618 uint32_t *cigar;
620 uint32_t ncigar;
628 uint32_t *TN;
629 int nTN, aTN; // used and allocated size for TN[]
632 int tn_id;
649 int ref_id;
652 int naux_block;
656 int decode_md;
[all …]
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| /dports/biology/htslib/htslib-1.14/cram/ |
| H A D | cram_structs.h | 603 struct cram_slice { struct
610 int64_t last_apos, max_apos;
618 uint32_t *cigar;
620 uint32_t ncigar;
628 uint32_t *TN;
629 int nTN, aTN; // used and allocated size for TN[]
632 int tn_id;
649 int ref_id;
652 int naux_block;
656 int decode_md;
[all …]
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| /dports/biology/iolib/io_lib-io_lib-1-14-10/io_lib/ |
| H A D | cram_structs.h | 546 cram_block **block;
550 int64_t last_apos, max_apos;
553 cram_record *crecs;
558 uint32_t *cigar;
560 uint32_t ncigar;
568 uint32_t *TN;
569 int nTN, aTN; // used and allocated size for TN[]
571 cram_block *tn_blk;
572 int tn_id;
576 cram_block *name_blk;
[all …]
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| /dports/biology/stacks/stacks-2.4/htslib/cram/ |
| H A D | cram_structs.h | 541 typedef struct cram_slice { struct
543 cram_block *hdr_block;
544 cram_block **block;
548 int last_apos, max_apos;
551 cram_record *crecs;
556 uint32_t *cigar;
557 uint32_t cigar_alloc;
558 uint32_t ncigar;
566 uint32_t *TN;
567 int nTN, aTN; // used and allocated size for TN[]
[all …]
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| /dports/biology/kallisto/kallisto-0.46.1/ext/htslib/cram/ |
| H A D | cram_structs.h | 541 typedef struct cram_slice { struct
543 cram_block *hdr_block;
544 cram_block **block;
548 int last_apos, max_apos;
551 cram_record *crecs;
556 uint32_t *cigar;
557 uint32_t cigar_alloc;
558 uint32_t ncigar;
566 uint32_t *TN;
567 int nTN, aTN; // used and allocated size for TN[]
[all …]
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| /dports/biology/vt/vt-0.57721/lib/htslib/htslib/ |
| H A D | cram.h | 77 typedef struct cram_slice cram_slice; typedef
|
| /dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/htslib/ |
| H A D | cram.h | 77 typedef struct cram_slice cram_slice; typedef
|
| /dports/biology/stacks/stacks-2.4/htslib/htslib/ |
| H A D | cram.h | 77 typedef struct cram_slice cram_slice; typedef
|
| /dports/biology/kallisto/kallisto-0.46.1/ext/htslib/htslib/ |
| H A D | cram.h | 77 typedef struct cram_slice cram_slice; typedef
|
| /dports/biology/py-pysam/pysam-0.18.0/htslib/htslib/ |
| H A D | cram.h | 96 typedef struct cram_slice cram_slice; typedef
|
| /dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/htslib/ |
| H A D | cram.h | 77 typedef struct cram_slice cram_slice; typedef
|
| /dports/biology/htslib/htslib-1.14/htslib/ |
| H A D | cram.h | 96 typedef struct cram_slice cram_slice; typedef
|