| /dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/tools/walkers/mutect/ |
| H A D | Mutect2EngineUnitTest.java | 35 …blic void testLeadingOrderInErrorRate(final int numRef, final int numAlt, final double errorRate) { in testLeadingOrderInErrorRate()
47 public void testNumRepeats(final int numRef, final int numAlt, final double errorRate) { in testNumRepeats()
81 public void testSmallNumAltExact(final int numRef, final double errorRate) { in testSmallNumAltExact()
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| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/walkers/contamination/ |
| H A D | ContaminationModel.java | 43 private final double errorRate; field in ContaminationModel
205 … double calculateMinorAlleleFraction(final double contamination, final double errorRate, final Li… in calculateMinorAlleleFraction()
210 …private static double calculateContamination(final double errorRate, final List<List<PileupSummary… in calculateContamination()
228 …[] genotypeLikelihoods(final PileupSummary site, final double c, final double errorRate, double ma… in genotypeLikelihoods()
245 …robability(final PileupSummary site, final double contamination, final double errorRate, final dou… in probability()
250 …d(final List<PileupSummary> segment, final double contamination, final double errorRate, final dou… in segmentLogLikelihood()
254 … List<List<PileupSummary>> segments, final double contamination, final double errorRate, final Lis… in modelLogLikelihood()
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| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/graphs/ |
| H A D | AdaptiveChainPruner.java | 43 final double errorRate = (double) errorCount / totalBases; in chainsToRemove() local
48 …elyErrorChains(final List<Path<V, E>> chains, final BaseGraph<V,E> graph, final double errorRate) { in likelyErrorChains()
144 …, Double> chainLogOdds(final Path<V,E> chain, final BaseGraph<V,E> graph, final double errorRate) { in chainLogOdds()
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| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/utils/ |
| H A D | QualityUtils.java | 208 public static byte errorProbToQual(final double errorRate) { in errorProbToQual()
224 public static byte errorProbToQual(final double errorRate, final byte maxQual) { in errorProbToQual()
304 public static double phredScaleErrorRate(final double errorRate) { in phredScaleErrorRate()
|
| /dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/utils/ |
| H A D | QualityUtilsUnitTest.java | 46 public void testMyData(final byte qual, final double errorRate) { in testMyData()
164 public void testPhredScaleDoubleOps(final double errorRate, final double expectedPhredScaled) { in testPhredScaleDoubleOps()
|
| /dports/devel/android-tools-adb/platform_system_core-android-9.0.0_r3/libsysutils/include/sysutils/ |
| H A D | FrameworkListener.h | 29 int errorRate; variable
|
| /dports/devel/android-tools-fastboot/platform_system_core-platform-tools-29.0.5/libsysutils/include/sysutils/ |
| H A D | FrameworkListener.h | 31 int errorRate; variable
|
| /dports/databases/hbase/hbase-1.2.1/hbase-server/src/main/java/org/apache/hadoop/hbase/util/ |
| H A D | ByteBloomFilter.java | 156 public static long computeBitSize(long maxKeys, double errorRate) { in computeBitSize()
171 public static long idealMaxKeys(long bitSize, double errorRate) { in idealMaxKeys()
188 public static long computeMaxKeys(long bitSize, double errorRate, in computeMaxKeys()
278 public ByteBloomFilter(int maxKeys, double errorRate, int hashType, in ByteBloomFilter()
303 double errorRate, int hashType, int foldFactor) { in createBySize()
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| H A D | CompoundBloomFilterBase.java | 44 protected float errorRate; field in CompoundBloomFilterBase
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| H A D | CompoundBloomFilterWriter.java | 90 public CompoundBloomFilterWriter(int chunkByteSizeHint, float errorRate, in CompoundBloomFilterWriter()
|
| /dports/biology/bbmap/bbmap/current/icecream/ |
| H A D | ReadBuilder.java | 43 float errorRate=(terms.length<7 ? 0 : Float.parseFloat(terms[6].split("=")[1])); in parse() local
111 float errorRate=0; field in ReadBuilder
|
| H A D | IceCreamMaker.java | 675 final float errorRate=randomRate(minErrorRate, maxErrorRate, randy); in generateZMW() local
723 current.add(baseCallAdapter(errorRate)); in generateZMW() argument
|
| /dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/graphs/ |
| H A D | ChainPrunerUnitTest.java | 139 …e, final byte[] ref, final byte[] alt, final double altFraction, final double errorRate, final int… in testAdaptivePruning()
308 …ithErrors(final byte[] sequence, final int start, final int end, final double errorRate, final Ran… in generateReadWithErrors()
317 …] generateReadWithErrors(final byte[] sequence, final int start, final double errorRate, final Ran… in generateReadWithErrors()
|
| /dports/graphics/ospray/ospray-2.8.0/apps/ospTestSuite/ |
| H A D | test_tools.h | 27 const float errorRate = 0.1; variable
|
| /dports/biology/canu/canu-2.2/src/overlapBasedTrimming/ |
| H A D | splitReads-workUnit.C | 26 double errorRate, in addAndFilterOverlaps()
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| H A D | splitReads.C | 33 double errorRate = 0.06; in main() local
|
| /dports/biology/canu/canu-2.2/src/overlapErrorAdjustment/ |
| H A D | correctOverlaps.H | 208 void initialize(coParameters *G_, double errorRate) { in initialize()
310 double errorRate; variable
|
| /dports/net/ns3/ns-allinone-3.35/ns-3.35/src/lte/model/ |
| H A D | lte-mi-error-model.cc | 535 double errorRate = 0.0; in GetPcfichPdcchError() local
677 double errorRate = 1.0; in GetTbDecodificationStats() local
|
| /dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/utils/downsampling/ |
| H A D | FractionalDownsamplerUnitTest.java | 150 final double errorRate = 1.0 / 1000; //we can fail this often in testClear() local
|
| /dports/www/moodle310/moodle/lib/mlbackend/php/phpml/src/Phpml/Classification/Ensemble/ |
| H A D | AdaBoost.php | 225 protected function calculateAlpha(float $errorRate): float
|
| /dports/www/moodle311/moodle/lib/mlbackend/php/phpml/src/Phpml/Classification/Ensemble/ |
| H A D | AdaBoost.php | 225 protected function calculateAlpha(float $errorRate): float
|
| /dports/www/moodle39/moodle/lib/mlbackend/php/phpml/src/Phpml/Classification/Ensemble/ |
| H A D | AdaBoost.php | 225 protected function calculateAlpha(float $errorRate): float
|
| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/yara/ |
| H A D | mapper.cpp | 290 unsigned errorRate; in parseCommandLine() local
|
| /dports/biology/canu/canu-2.2/src/correction/ |
| H A D | generateCorrectionLayouts.C | 178 uint32 errorRate = AS_OVS_encodeEvalue(0.015); in main() local
|
| /dports/games/gnubg/gnubg-1.06.002/ |
| H A D | formatgs.c | 69 errorRate(const float rn, const float ru, const int nMatchTo) in errorRate() function
|