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Searched defs:feat_ci (Results 1 – 24 of 24) sorted by relevance

/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/
H A Dtable_field.cpp119 CTableFieldHandle_Base::GetPtr(const CFeat_CI& feat_ci, in GetPtr()
152 CTableFieldHandle_Base::GetPtr(const CFeat_CI& feat_ci, in GetPtr()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objmgr/
H A Dtable_field.cpp119 CTableFieldHandle_Base::GetPtr(const CFeat_CI& feat_ci, in GetPtr()
152 CTableFieldHandle_Base::GetPtr(const CFeat_CI& feat_ci, in GetPtr()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objmgr/
H A Dtable_field.hpp78 bool TryGet(const CFeat_CI& feat_ci, Value& v) const { in TryGet() argument
159 void Get(const CFeat_CI& feat_ci, TFieldType& v) const { in Get() argument
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objmgr/
H A Dtable_field.hpp78 bool TryGet(const CFeat_CI& feat_ci, Value& v) const { in TryGet() argument
159 void Get(const CFeat_CI& feat_ci, TFieldType& v) const { in Get() argument
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/streamtest/
H A Dprocess_invert.hpp83 for (CFeat_CI feat_ci(bsh, sel); feat_ci; ++feat_ci) { in SeqEntryProcess() local
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/util/
H A Dautodef.cpp470 bool CAutoDef::x_Is5SList(CFeat_CI feat_ci) in x_Is5SList()
513 bool CAutoDef::x_IsSingleMiscFeat(CFeat_CI feat_ci) in x_IsSingleMiscFeat()
585 CFeat_CI feat_ci(master_bh); in x_GetFeatureClauses() local
741 CFeat_CI feat_ci(bh, sel); in s_GetProductFlagFromCDSProductNames() local
H A Dsequence.cpp1682 auto_ptr<CFeat_CI> &feat_ci, in setUpFeatureIterator()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objmgr/util/
H A Dautodef.cpp470 bool CAutoDef::x_Is5SList(CFeat_CI feat_ci) in x_Is5SList()
513 bool CAutoDef::x_IsSingleMiscFeat(CFeat_CI feat_ci) in x_IsSingleMiscFeat()
585 CFeat_CI feat_ci(master_bh); in x_GetFeatureClauses() local
741 CFeat_CI feat_ci(bh, sel); in s_GetProductFlagFromCDSProductNames() local
H A Dsequence.cpp1682 auto_ptr<CFeat_CI> &feat_ci, in setUpFeatureIterator()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/format/
H A Dgene_finder.cpp78 auto_ptr<CFeat_CI> &feat_ci, in setUpFeatureIterator()
789 CFeat_CI feat_ci( ctx.GetHandle().GetTSE_Handle(), sel, obj_id ); in ResolveGeneObjectId() local
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/format/
H A Dgene_finder.cpp78 auto_ptr<CFeat_CI> &feat_ci, in setUpFeatureIterator()
789 CFeat_CI feat_ci( ctx.GetHandle().GetTSE_Handle(), sel, obj_id ); in ResolveGeneObjectId() local
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/flatfile/
H A Dfcleanup.cpp450 CFeat_CI feat_ci(protHandle, CSeqFeatData::eSubtype_prot); in g_InstantiateMissingProteins() local
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/edit/unit_test/
H A Dunit_test_entry_edit.cpp1100 CFeat_CI feat_ci(bsh, feat_sel); in BOOST_AUTO_TEST_CASE() local
1210 CFeat_CI feat_ci(bsh, feat_sel); in BOOST_AUTO_TEST_CASE() local
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/cleanup/
H A Dcleanup.cpp989 for (CFeat_CI feat_ci(bsh, SAnnotSelector(CSeqFeatData::eSubtype_gene)); feat_ci; ++feat_ci) in FindMatchingLocusGene() local
1037 for (CFeat_CI feat_ci(bsh, SAnnotSelector(CSeqFeatData::eSubtype_gene)); feat_ci; ++feat_ci) in FindMatchingLocus_tagGene() local
1474 CFeat_CI feat_ci(prot, CSeqFeatData::eSubtype_prot); in SetProteinName() local
2163 CFeat_CI feat_ci(bsh, sel); in SetGeneticCodes() local
2729 CFeat_CI feat_ci(p, CSeqFeatData::eSubtype_prot); in WGSCleanup() local
H A Dnewcleanupp.cpp12084 CFeat_CI feat_ci( bsh, sel ); in ResynchPeptidePartials() local
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/cleanup/
H A Dcleanup.cpp989 for (CFeat_CI feat_ci(bsh, SAnnotSelector(CSeqFeatData::eSubtype_gene)); feat_ci; ++feat_ci) in FindMatchingLocusGene() local
1037 for (CFeat_CI feat_ci(bsh, SAnnotSelector(CSeqFeatData::eSubtype_gene)); feat_ci; ++feat_ci) in FindMatchingLocus_tagGene() local
1474 CFeat_CI feat_ci(prot, CSeqFeatData::eSubtype_prot); in SetProteinName() local
2163 CFeat_CI feat_ci(bsh, sel); in SetGeneticCodes() local
2729 CFeat_CI feat_ci(p, CSeqFeatData::eSubtype_prot); in WGSCleanup() local
H A Dnewcleanupp.cpp12016 CFeat_CI feat_ci( bsh, sel ); in ResynchPeptidePartials() local
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/validator/
H A Dvalidatorp.cpp2942 for (CFeat_CI feat_ci (seh); in Setup() local
3535 CFeat_CI feat_ci(featKey.bioseq_h); in GetFeatFromCache() local
3712 CFeat_CI feat_ci(*bioseq_ci); in GetBioseqsOfFeatCache() local
H A Dvaliderror_bioseq.cpp1516 for (CFeat_CI feat_ci(bsh, sel); feat_ci; ++feat_ci) { in ValidateBioseqContext() local
8239 for (CFeat_CI feat_ci(bsh, sel); feat_ci; ++feat_ci) { in ValidateTwintrons() local
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/gnomon/
H A Dasn1.cpp1270 CFeat_CI feat_ci(scope.GetSeq_annotHandle(*feature_table), sel); in ExtractModels() local
H A Dchainer.cpp6620 CFeat_CI feat_ci(*scope, mrna, sel); in transform_align() local
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/misc/discrepancy/
H A Dsequence_tests.cpp1345 CFeat_CI feat_ci(bioseq, CSeqFeatData::e_Cdregion); in DISCREPANCY_AUTOFIX() local
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/edit/
H A Dseq_entry_edit.cpp2147 CFeat_CI feat_ci(bsh, feat_sel); in TrimSequenceAndAnnotation() local
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/edit/
H A Dseq_entry_edit.cpp2147 CFeat_CI feat_ci(bsh, feat_sel); in TrimSequenceAndAnnotation() local