/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/ |
H A D | table_field.cpp | 119 CTableFieldHandle_Base::GetPtr(const CFeat_CI& feat_ci, in GetPtr() 152 CTableFieldHandle_Base::GetPtr(const CFeat_CI& feat_ci, in GetPtr()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objmgr/ |
H A D | table_field.cpp | 119 CTableFieldHandle_Base::GetPtr(const CFeat_CI& feat_ci, in GetPtr() 152 CTableFieldHandle_Base::GetPtr(const CFeat_CI& feat_ci, in GetPtr()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objmgr/ |
H A D | table_field.hpp | 78 bool TryGet(const CFeat_CI& feat_ci, Value& v) const { in TryGet() argument 159 void Get(const CFeat_CI& feat_ci, TFieldType& v) const { in Get() argument
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objmgr/ |
H A D | table_field.hpp | 78 bool TryGet(const CFeat_CI& feat_ci, Value& v) const { in TryGet() argument 159 void Get(const CFeat_CI& feat_ci, TFieldType& v) const { in Get() argument
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/streamtest/ |
H A D | process_invert.hpp | 83 for (CFeat_CI feat_ci(bsh, sel); feat_ci; ++feat_ci) { in SeqEntryProcess() local
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/util/ |
H A D | autodef.cpp | 470 bool CAutoDef::x_Is5SList(CFeat_CI feat_ci) in x_Is5SList() 513 bool CAutoDef::x_IsSingleMiscFeat(CFeat_CI feat_ci) in x_IsSingleMiscFeat() 585 CFeat_CI feat_ci(master_bh); in x_GetFeatureClauses() local 741 CFeat_CI feat_ci(bh, sel); in s_GetProductFlagFromCDSProductNames() local
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H A D | sequence.cpp | 1682 auto_ptr<CFeat_CI> &feat_ci, in setUpFeatureIterator()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objmgr/util/ |
H A D | autodef.cpp | 470 bool CAutoDef::x_Is5SList(CFeat_CI feat_ci) in x_Is5SList() 513 bool CAutoDef::x_IsSingleMiscFeat(CFeat_CI feat_ci) in x_IsSingleMiscFeat() 585 CFeat_CI feat_ci(master_bh); in x_GetFeatureClauses() local 741 CFeat_CI feat_ci(bh, sel); in s_GetProductFlagFromCDSProductNames() local
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H A D | sequence.cpp | 1682 auto_ptr<CFeat_CI> &feat_ci, in setUpFeatureIterator()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/format/ |
H A D | gene_finder.cpp | 78 auto_ptr<CFeat_CI> &feat_ci, in setUpFeatureIterator() 789 CFeat_CI feat_ci( ctx.GetHandle().GetTSE_Handle(), sel, obj_id ); in ResolveGeneObjectId() local
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/format/ |
H A D | gene_finder.cpp | 78 auto_ptr<CFeat_CI> &feat_ci, in setUpFeatureIterator() 789 CFeat_CI feat_ci( ctx.GetHandle().GetTSE_Handle(), sel, obj_id ); in ResolveGeneObjectId() local
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/flatfile/ |
H A D | fcleanup.cpp | 450 CFeat_CI feat_ci(protHandle, CSeqFeatData::eSubtype_prot); in g_InstantiateMissingProteins() local
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/edit/unit_test/ |
H A D | unit_test_entry_edit.cpp | 1100 CFeat_CI feat_ci(bsh, feat_sel); in BOOST_AUTO_TEST_CASE() local 1210 CFeat_CI feat_ci(bsh, feat_sel); in BOOST_AUTO_TEST_CASE() local
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/cleanup/ |
H A D | cleanup.cpp | 989 for (CFeat_CI feat_ci(bsh, SAnnotSelector(CSeqFeatData::eSubtype_gene)); feat_ci; ++feat_ci) in FindMatchingLocusGene() local 1037 for (CFeat_CI feat_ci(bsh, SAnnotSelector(CSeqFeatData::eSubtype_gene)); feat_ci; ++feat_ci) in FindMatchingLocus_tagGene() local 1474 CFeat_CI feat_ci(prot, CSeqFeatData::eSubtype_prot); in SetProteinName() local 2163 CFeat_CI feat_ci(bsh, sel); in SetGeneticCodes() local 2729 CFeat_CI feat_ci(p, CSeqFeatData::eSubtype_prot); in WGSCleanup() local
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H A D | newcleanupp.cpp | 12084 CFeat_CI feat_ci( bsh, sel ); in ResynchPeptidePartials() local
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/cleanup/ |
H A D | cleanup.cpp | 989 for (CFeat_CI feat_ci(bsh, SAnnotSelector(CSeqFeatData::eSubtype_gene)); feat_ci; ++feat_ci) in FindMatchingLocusGene() local 1037 for (CFeat_CI feat_ci(bsh, SAnnotSelector(CSeqFeatData::eSubtype_gene)); feat_ci; ++feat_ci) in FindMatchingLocus_tagGene() local 1474 CFeat_CI feat_ci(prot, CSeqFeatData::eSubtype_prot); in SetProteinName() local 2163 CFeat_CI feat_ci(bsh, sel); in SetGeneticCodes() local 2729 CFeat_CI feat_ci(p, CSeqFeatData::eSubtype_prot); in WGSCleanup() local
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H A D | newcleanupp.cpp | 12016 CFeat_CI feat_ci( bsh, sel ); in ResynchPeptidePartials() local
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/validator/ |
H A D | validatorp.cpp | 2942 for (CFeat_CI feat_ci (seh); in Setup() local 3535 CFeat_CI feat_ci(featKey.bioseq_h); in GetFeatFromCache() local 3712 CFeat_CI feat_ci(*bioseq_ci); in GetBioseqsOfFeatCache() local
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H A D | validerror_bioseq.cpp | 1516 for (CFeat_CI feat_ci(bsh, sel); feat_ci; ++feat_ci) { in ValidateBioseqContext() local 8239 for (CFeat_CI feat_ci(bsh, sel); feat_ci; ++feat_ci) { in ValidateTwintrons() local
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/gnomon/ |
H A D | asn1.cpp | 1270 CFeat_CI feat_ci(scope.GetSeq_annotHandle(*feature_table), sel); in ExtractModels() local
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H A D | chainer.cpp | 6620 CFeat_CI feat_ci(*scope, mrna, sel); in transform_align() local
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/misc/discrepancy/ |
H A D | sequence_tests.cpp | 1345 CFeat_CI feat_ci(bioseq, CSeqFeatData::e_Cdregion); in DISCREPANCY_AUTOFIX() local
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/edit/ |
H A D | seq_entry_edit.cpp | 2147 CFeat_CI feat_ci(bsh, feat_sel); in TrimSequenceAndAnnotation() local
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/edit/ |
H A D | seq_entry_edit.cpp | 2147 CFeat_CI feat_ci(bsh, feat_sel); in TrimSequenceAndAnnotation() local
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