Searched defs:firstAtomIndex (Results 1 – 14 of 14) sorted by relevance
| /dports/science/jmol/jmol-14.32.7/src/org/jmol/modelsetbio/ |
| H A D | AminoMonomer.java | 74 int firstAtomIndex, int lastAtomIndex, in validateAndAllocate()
89 int firstAtomIndex, in isBondedCorrectlyRange()
100 private static boolean isBondedCorrectly(int firstAtomIndex, byte[] offsets, in isBondedCorrectly()
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| H A D | Monomer.java | 75 int firstAtomIndex, int lastAtomIndex, byte[] interestingAtomOffsets) { in set2()
142 protected static byte[] scanForOffsets(int firstAtomIndex, in scanForOffsets()
352 int firstAtomIndex, in checkOptional()
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| H A D | NucleicMonomer.java | 142 int firstAtomIndex, int lastAtomIndex, in validateAndAllocate()
175 int firstAtomIndex, int lastAtomIndex, in set4()
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| H A D | BioResolver.java | 144 int seqcode, int firstAtomIndex, in distinguishAndPropagateGroup()
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| /dports/science/jmol/jmol-14.32.7/src/org/jmol/atomdata/ |
| H A D | AtomData.java | 151 public int firstAtomIndex; field in AtomData
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| /dports/science/jmol/jmol-14.32.7/src/org/jmol/util/ |
| H A D | JmolMolecule.java | 57 public int firstAtomIndex; field in JmolMolecule
280 …private static JmolMolecule initialize(Node[] nodes, int moleculeIndex, int firstAtomIndex, BS ato… in initialize()
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| /dports/science/jmol/jmol-14.32.7/src/org/jmol/api/ |
| H A D | JmolDataManager.java | 31 void deleteModelAtoms(int firstAtomIndex, int nAtoms, BS bsDeleted); in deleteModelAtoms()
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| /dports/science/jmol/jmol-14.32.7/src/org/jmol/modelset/ |
| H A D | Group.java | 71 public int firstAtomIndex = -1; field in Group
100 int firstAtomIndex, int lastAtomIndex) { in setGroup()
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| H A D | Model.java | 135 public int firstAtomIndex; field in Model
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| H A D | ModelLoader.java | 1247 int firstAtomIndex, int lastAtomIndex) { in distinguishAndPropagateGroup()
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| H A D | AtomCollection.java | 2648 protected void deleteModelAtoms(int firstAtomIndex, int nAtoms, BS bsAtoms) { in deleteModelAtoms()
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| H A D | ModelSet.java | 766 int firstAtomIndex = old.firstAtomIndex; in deleteModels() local
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| /dports/science/jmol/jmol-14.32.7/src/org/jmol/viewer/ |
| H A D | DataManager.java | 316 public void deleteModelAtoms(int firstAtomIndex, int nAtoms, BS bsDeleted) { in deleteModelAtoms()
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| H A D | Viewer.java | 8698 public void deleteModelAtoms(int modelIndex, int firstAtomIndex, int nAtoms, in deleteModelAtoms()
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