Searched defs:fpenalty (Results 1 – 11 of 11) sorted by relevance
127 double fpenalty = (double)penalty; in backdp() local295 double fpenalty = (double)penalty; in MSalign11() local
176 double fpenalty = (double)penalty; in G__align11() local698 double fpenalty = (double)penal; in G__align11_noalign() local
246 double fpenalty = (double)penalty; in L__align11() local786 double fpenalty = (double)penalty; in L__align11_noalign() local
156 double fpenalty = (double)penalty; in genL__align11() local
2179 double fpenalty = (double)RNApenalty; in Lalignmm_hmout() local2380 double fpenalty = (double)penalty; in Lalign2m2m_hmout() local
171 double fpenalty = (double)penalty; in suboptalign11() local
1057 double fpenalty = (double)penalty; in A__align() local1824 double fpenalty = (double)penalty; in A__align_variousdist() local
995 double fpenalty = (double)penalty; in partA__align() local1683 double fpenalty = (double)penalty; in partA__align_variousdist() local
1689 double fpenalty = (double)penalty; in MSalignmm() local3330 double fpenalty = (double)penalty; in MSalignmm_variousdist() local
2767 double fpenalty = (double)penalty; in D__align() local4603 double fpenalty = (double)penalty; in D__align_variousdist() local
1962 fpenalty = lambda x: self.boundary_handler.__call__( function