| /dports/science/py-obspy/obspy-1.2.2/obspy/scripts/ |
| H A D | sds_html_report.py | 162 gap_info=True): argument
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/util/unit_test/ |
| H A D | unit_test_bioseqgaps_ci.cpp | 195 SGapInfo gap_info = { start_pos, length }; in makeGapInfo() local
331 SGapInfo gap_info = { in BOOST_AUTO_TEST_CASE() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/readers/ |
| H A D | agp_seq_entry.cpp | 136 CSeq_data::TGap & gap_info = in OnGapOrComponent() local
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/readers/ |
| H A D | agp_seq_entry.cpp | 136 CSeq_data::TGap & gap_info = in OnGapOrComponent() local
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| /dports/biology/ncbi-toolkit/ncbi/demo/ |
| H A D | aceread_tst.c | 396 static void PrintTraceGapsXML (TGapInfoPtr gap_info) in PrintTraceGapsXML()
413 static void TestPosConversions (TGapInfoPtr gap_info) in TestPosConversions()
469 TGapInfoPtr gap_info; in TestGapInfoReading() local
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/algo/blast/core/ |
| H A D | blast_hits.h | 134 GapEditScript* gap_info;/**< ALL gapped alignment is here */ member
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/blast/core/ |
| H A D | blast_hits.h | 134 GapEditScript* gap_info;/**< ALL gapped alignment is here */ member
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| /dports/biology/ncbi-toolkit/ncbi/api/ |
| H A D | aceread.c | 209 extern int SeqPosFromTilingPos (int tiling_pos, TGapInfoPtr gap_info) in SeqPosFromTilingPos()
228 extern int TilingPosFromSeqPos (int seq_pos, TGapInfoPtr gap_info) in TilingPosFromSeqPos()
247 static void AdjustGapInfoFor5Trim (TGapInfoPtr gap_info, int trim) in AdjustGapInfoFor5Trim()
276 static void AdjustGapInfoFor3Trim (TGapInfoPtr gap_info, int new_len) in AdjustGapInfoFor3Trim()
2442 static void WriteTraceGapsXML (TGapInfoPtr gap_info, FILE *fp) in WriteTraceGapsXML()
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| /dports/biology/ncbi-toolkit/ncbi/algo/blast/core/ |
| H A D | blast_hits.h | 134 GapEditScript* gap_info;/**< ALL gapped alignment is here */ member
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sra/readers/sra/ |
| H A D | wgsread.cpp | 2420 CWGSSeqIterator::TWGSContigGapInfo gap_info; in GetGapInfo() local
3674 TWGSContigGapInfo gap_info = m_Cur->GetGapInfo(m_CurrId); in x_AmbiguousBlock() local
3893 TWGSContigGapInfo gap_info, in x_GetSegments()
4129 TWGSContigGapInfo gap_info; in x_GetSeq_inst() local
4849 TWGSContigGapInfo gap_info; in x_CreateDataChunk() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/align/util/ |
| H A D | compartment_finder.hpp | 623 CGapInfo<THit> *gap_info, in CCompartmentFinder()
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| /dports/biology/ncbi-toolkit/ncbi/tools/ |
| H A D | blastool.c | 6008 GapXEditBlockPtr gap_info; in BlastHSPGetNumIdentical() local
6083 GapXEditBlockPtr gap_info; in OOFBlastHSPGetNumIdentical() local
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| H A D | mblast.c | 3617 GapXEditBlockPtr gap_info = hsp->gap_info; in ReevaluateScoreWithAmbiguities() local
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| H A D | blastdef.h | 1555 GapXEditBlockPtr gap_info; /* ALL gapped alignment is here */ member
1632 GapXEditBlockPtr gap_info; /* ALL gapped alignment is here */ member
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