Searched defs:gap_open_extend (Results 1 – 9 of 9) sorted by relevance
73 Int4 gap_open_extend = gap_open + gap_extend; in s_SmithWatermanScoreOnly() local179 Int4 gap_open_extend = gap_open + gap_extend; in s_NuclSmithWaterman() local443 Int4 gap_open_extend = gap_open + gap_extend; in SmithWatermanScoreWithTraceback() local
205 Int4 gap_open_extend = gap_open + gap_extend; in s_GetNextAffineTbackFromIndel() local782 Int4 gap_open_extend; in BLAST_AffineGreedyAlign() local
378 Int4 gap_open_extend; in ALIGN_EX() local736 Int4 gap_open_extend; in Blast_SemiGappedAlign() local993 Int4 gap_open_extend; in s_RestrictedGappedAlign() local1330 Int4 gap_open_extend; in s_OutOfFrameAlignWithTraceback() local1945 Int4 gap_open_extend; in s_OutOfFrameGappedAlign() local3014 Int4 gap_open_extend; in s_BlastAlignPackedNucl() local
205 Int4 gap_open_extend = gap_open + gap_extend; in s_GetNextAffineTbackFromIndel() local785 Int4 gap_open_extend; in BLAST_AffineGreedyAlign() local
386 Int4 gap_open_extend; in ALIGN_EX() local744 Int4 gap_open_extend; in Blast_SemiGappedAlign() local1001 Int4 gap_open_extend; in s_RestrictedGappedAlign() local1338 Int4 gap_open_extend; in s_OutOfFrameAlignWithTraceback() local1953 Int4 gap_open_extend; in s_OutOfFrameGappedAlign() local3035 Int4 gap_open_extend; in s_BlastAlignPackedNucl() local