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Searched defs:gap_open_extend (Results 1 – 9 of 9) sorted by relevance

/dports/biology/ncbi-toolkit/ncbi/algo/blast/core/
H A Dblast_sw.c73 Int4 gap_open_extend = gap_open + gap_extend; in s_SmithWatermanScoreOnly() local
179 Int4 gap_open_extend = gap_open + gap_extend; in s_NuclSmithWaterman() local
443 Int4 gap_open_extend = gap_open + gap_extend; in SmithWatermanScoreWithTraceback() local
H A Dgreedy_align.c205 Int4 gap_open_extend = gap_open + gap_extend; in s_GetNextAffineTbackFromIndel() local
782 Int4 gap_open_extend; in BLAST_AffineGreedyAlign() local
H A Dblast_gapalign.c378 Int4 gap_open_extend; in ALIGN_EX() local
736 Int4 gap_open_extend; in Blast_SemiGappedAlign() local
993 Int4 gap_open_extend; in s_RestrictedGappedAlign() local
1330 Int4 gap_open_extend; in s_OutOfFrameAlignWithTraceback() local
1945 Int4 gap_open_extend; in s_OutOfFrameGappedAlign() local
3014 Int4 gap_open_extend; in s_BlastAlignPackedNucl() local
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/core/
H A Dblast_sw.c73 Int4 gap_open_extend = gap_open + gap_extend; in s_SmithWatermanScoreOnly() local
179 Int4 gap_open_extend = gap_open + gap_extend; in s_NuclSmithWaterman() local
443 Int4 gap_open_extend = gap_open + gap_extend; in SmithWatermanScoreWithTraceback() local
H A Dgreedy_align.c205 Int4 gap_open_extend = gap_open + gap_extend; in s_GetNextAffineTbackFromIndel() local
785 Int4 gap_open_extend; in BLAST_AffineGreedyAlign() local
H A Dblast_gapalign.c386 Int4 gap_open_extend; in ALIGN_EX() local
744 Int4 gap_open_extend; in Blast_SemiGappedAlign() local
1001 Int4 gap_open_extend; in s_RestrictedGappedAlign() local
1338 Int4 gap_open_extend; in s_OutOfFrameAlignWithTraceback() local
1953 Int4 gap_open_extend; in s_OutOfFrameGappedAlign() local
3035 Int4 gap_open_extend; in s_BlastAlignPackedNucl() local
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/core/
H A Dblast_sw.c73 Int4 gap_open_extend = gap_open + gap_extend; in s_SmithWatermanScoreOnly() local
179 Int4 gap_open_extend = gap_open + gap_extend; in s_NuclSmithWaterman() local
443 Int4 gap_open_extend = gap_open + gap_extend; in SmithWatermanScoreWithTraceback() local
H A Dgreedy_align.c205 Int4 gap_open_extend = gap_open + gap_extend; in s_GetNextAffineTbackFromIndel() local
785 Int4 gap_open_extend; in BLAST_AffineGreedyAlign() local
H A Dblast_gapalign.c386 Int4 gap_open_extend; in ALIGN_EX() local
744 Int4 gap_open_extend; in Blast_SemiGappedAlign() local
1001 Int4 gap_open_extend; in s_RestrictedGappedAlign() local
1338 Int4 gap_open_extend; in s_OutOfFrameAlignWithTraceback() local
1953 Int4 gap_open_extend; in s_OutOfFrameGappedAlign() local
3035 Int4 gap_open_extend; in s_BlastAlignPackedNucl() local