| /dports/biology/ncbi-toolkit/ncbi/demo/ |
| H A D | nps2gps.c | 631 GBQualPtr gbq; in MakeIdFromTscriptID() local
670 GBQualPtr gbq; in MakeIdFromTempID() local
784 GBQualPtr gbq; in AddGeneralIdFromQual() local
913 GBQualPtr gbq, nextqual; in RemoveTempIDs() local
939 GBQualPtr gbq, nextqual; in RemoveOrigIDs() local
967 GBQualPtr gbq; in RemoveOrigPrefix() local
1047 GBQualPtr gbq; in IsTransposonOrRetro() local
1323 GBQualPtr gbq; in ReciprocalTranscriptIDs() local
1353 GBQualPtr gbq; in GetCDSByProteinID() local
1892 GBQualPtr gbq, lastgbq; in NPStoGPS() local
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| H A D | releasescan.c | 65 GBQualPtr gbq; in DoFeat() local
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| H A D | snpsynon.c | 350 GBQualPtr gbq; in FindSNPsOnCDS() local
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| H A D | reblobber.c | 211 GBQualPtr gbq; in EnhanceOneCDS() local
322 GBQualPtr gbq, nm_gbq; in EnhanceOneRna() local
632 GBQualPtr gbq; in ProcessOneAnnot() local
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| H A D | tbl2asn.c | 987 GBQualPtr gbq; in PrintOneGeneLine() local
1429 GBQualPtr gbq; in EnhanceOneCDS() local
1540 GBQualPtr gbq, nm_gbq; in EnhanceOneRna() local
2563 GBQualPtr gbq; in ProcessOneAnnot() local
2819 GBQualPtr gbq; in GenomizeFeatureSeqIds() local
4980 GBQualPtr gbq; in MakeNucProtCDS() local
5287 GBQualPtr gbq; in RemoveGBQualIDs() local
6862 GBQualPtr gbq; in LinkCDSmRNAByProteinID() local
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| H A D | cleanasn.c | 585 GBQualPtr gbq; in RemoveFeatEvInf() local
1762 GBQualPtr gbq; in AddMissingProtRef() local
3037 GBQualPtr gbq; in ScoreFeature() local
8752 GBQualPtr gbq; in DoAnticodonReport() local
11171 GBQualPtr gbq; in CollectRecipIDs() local
11228 GBQualPtr gbq; in FillInRecipIDs() local
11299 GBQualPtr gbq; in AddMissingGbQual() local
11374 GBQualPtr gbq; in DoReversePreOrNcRNATransIDs() local
11423 GBQualPtr gbq; in SeqToAnticodon() local
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| H A D | idcleanscan.c | 569 GBQualPtr gbq; in DoPseudoCDS() local
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| H A D | scantest.c | 314 GBQualPtr gbq; in ScoreFeature() local
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| /dports/biology/ncbi-toolkit/ncbi/api/ |
| H A D | sqnutil1.c | 2156 GBQualPtr gbq; in PromoteXrefsExEx() local
5054 GBQualPtr gbq; in ModernizeFeatureGBQuals() local
5192 GBQualPtr gbq; in CleanupFeatureGBQuals() local
5683 GBQualPtr gbq; in CleanupDuplicateGBQuals() local
5765 GBQualPtr gbq; in GbqualLink() local
7357 GBQualPtr gbq; in GbqualToOrpMod() local
12422 GBQualPtr gbq; in AddNonCopiedQual() local
12485 GBQualPtr gbq; in ConvertToNcRNA() local
12572 GBQualPtr gbq; in ModernizeFeatureStrings() local
12714 GBQualPtr gbq; in IsFeatureCommentRedundant() local
[all …]
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| H A D | asn2gnb4.c | 3056 GBQualPtr gbq; in FormatFeatureBlockQuals() local
5934 GBQualPtr gbq; in ParseInference() local
6493 GBQualPtr gbq; in FormatFeatureBlockEx() local
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| H A D | findrepl.c | 1282 GBQualPtr gbq; in FindReplFeats() local
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| H A D | valid.c | 4494 GBQualPtr gbq; in ValCountInfAccnVer() local
10741 GBQualPtr gbq; in ValidateSeqFeatCommon() local
18292 GBQualPtr gbq; in IsTransposonOrRetro() local
19467 GBQualPtr gbq; in ValidateBioseqContextIndexed() local
26156 GBQualPtr gbq; in ValidateExceptText() local
27777 GBQualPtr gbq; in ValidateRna() local
28266 GBQualPtr gbq; in ValidateSeqFeat() local
30197 GBQualPtr gbq; in LeuCUGstart() local
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| H A D | asn2gnbi.h | 192 GBQualPtr gbq; member
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| /dports/biology/ncbi-toolkit/ncbi/desktop/ |
| H A D | cdrgn.c | 3383 GBQualPtr qual, gbq; in LabelChangeOnly() local
3613 GBQualPtr gbq; in Cdr_IsPseudo() local
4142 GBQualPtr gbq; in CdRgnFeatFormActnProc() local
5224 GBQualPtr gbq; in CDSPseudoByGeneFunc() local
6772 GBQualPtr gbq; in FindOrAddQual() local
6791 GBQualPtr gbq, gbq_next, gbq_prev = NULL; in RemoveQualByName() local
6825 GBQualPtr gbq, gbq_prev = NULL; in ConvertProductQualToRnaRefName() local
6854 GBQualPtr gbq; in ConvertRnaRefNameToProductQual() local
7555 GBQualPtr gbq; in RnaRefPtrToForm() local
7753 GBQualPtr gbq; in SetGBQualProduct() local
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| H A D | dlgutil1.c | 1234 GBQualPtr gbq; in GbqualsToPseudogenePopup() local
1260 GBQualPtr gbq, gbqlast = NULL; in PseudogenePopupToGbquals() local
1296 GBQualPtr gbq; in GbqualsToVisStringDialog() local
1315 GBQualPtr gbq, gbqlast = NULL; in VisStringDialogToGbquals() local
1543 GBQualPtr gbq; in CleanupEvidenceGBQuals() local
1761 GBQualPtr gbq; in TestInference() local
3904 GBQualPtr gbq; in QualsDialogToGBQualPtr() local
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| H A D | dlgutil2.c | 1330 GBQualPtr gbq; in FieldPageToGBQualPtr() local
1396 GBQualPtr gbq; in CreateImportFields() local
1724 GBQualPtr gbq; in CreateCommonFeatureGroupEx() local
7255 GBQualPtr gbq; in GBQualsToInferenceDialog() local
7471 GBQualPtr gbq, lastgbq; in InferenceDialogToGBQuals() local
7983 GBQualPtr gbq, gbqlast = NULL; in ExperimentDialogToGbquals() local
8013 GBQualPtr gbq; in GBQualsToExperimentDialog() local
12975 GBQualPtr gbq, in AddMandatoryAndOptionalQuals()
13012 GBQualPtr gbq, gbq_new, head = NULL, last = NULL; in CopyGBQualList() local
13101 GBQualPtr gbq = NULL, gbq_it; in NewCreateImportFields() local
[all …]
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| H A D | vsmutil.c | 892 GBQualPtr gbq; in GetEcNumberReport() local
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| /dports/biology/ncbi-toolkit/ncbi/tools/ |
| H A D | toporg.c | 3214 GBQualPtr gbq; in HasEvidenceOrInferenceQual() local
3806 GBQualPtr gbq; in MarkMovedGeneGbquals() local
5427 GBQualPtr gbq; in SsecTestPseudoProc() local
5455 GBQualPtr gbq; in SsecSetPseudoProc() local
5483 GBQualPtr gbq; in SynchronizePseudogenesProc() local
6558 GBQualPtr gbq; in MapSegFeatToMaster() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/cleanup/ |
| H A D | newcleanupp.cpp | 2946 CGb_qual& gbq in GBQualBC()
3483 bool CNewCleanup_imp::x_CleanupRptUnit(CGb_qual& gbq) in x_CleanupRptUnit()
3498 void CNewCleanup_imp::x_ChangeTransposonToMobileElement(CGb_qual& gbq) in x_ChangeTransposonToMobileElement()
3535 void CNewCleanup_imp::x_ChangeInsertionSeqToMobileElement(CGb_qual& gbq) in x_ChangeInsertionSeqToMobileElement()
6184 CGb_qual& gbq = **gbq_it; in x_CleanSeqFeatQuals() local
6207 CGb_qual& gbq = **gbq_it; in x_CleanSeqFeatQuals() local
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/cleanup/ |
| H A D | newcleanupp.cpp | 2885 CGb_qual& gbq in GBQualBC()
3422 bool CNewCleanup_imp::x_CleanupRptUnit(CGb_qual& gbq) in x_CleanupRptUnit()
3437 void CNewCleanup_imp::x_ChangeTransposonToMobileElement(CGb_qual& gbq) in x_ChangeTransposonToMobileElement()
3474 void CNewCleanup_imp::x_ChangeInsertionSeqToMobileElement(CGb_qual& gbq) in x_ChangeInsertionSeqToMobileElement()
6123 CGb_qual& gbq = **gbq_it; in x_CleanSeqFeatQuals() local
6146 CGb_qual& gbq = **gbq_it; in x_CleanSeqFeatQuals() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/format/ |
| H A D | feature_item.cpp | 3418 const CGb_qual& gbq = **gbq_itr; in x_AddQualsExt() local
3458 const CGb_qual& gbq = **gbq_itr; in x_AddQualsExt() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/validator/ |
| H A D | single_feat_validator.cpp | 1338 for (auto gbq : m_Feat.GetQual()) { in x_ValidateGbquals() local
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| /dports/biology/ncbi-toolkit/ncbi/access/ |
| H A D | pmfapi.c | 3363 GBQualPtr gbq; in LookupInference() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/readers/ |
| H A D | readfeat.cpp | 2066 CRef<CGb_qual> gbq (new CGb_qual); in x_AddGBQualToFeature() local
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/readers/ |
| H A D | readfeat.cpp | 2066 CRef<CGb_qual> gbq (new CGb_qual); in x_AddGBQualToFeature() local
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