Searched defs:getSequenceIndex (Results 1 – 6 of 6) sorted by relevance
91 public final int getSequenceIndex(final String contig) { in getSequenceIndex() method in MRUCachingSAMSequenceDictionary
80 uint32 getSequenceIndex() { return _sequenceIndex; } in getSequenceIndex() function
202 public int getSequenceIndex() { in getSequenceIndex() method in ReferenceSequenceFromSeekable.FastaSequenceIndexEntry
868 public int getSequenceIndex() { in getSequenceIndex() method in GlyphTable.RuleLookup
234 public static int getSequenceIndex(AlignmentI al, SequenceI seq) in getSequenceIndex() method in AlignmentUtils