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Searched defs:horizontalNextGridOrigin (Results 1 – 3 of 3) sorted by relevance

/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/seeds/
H A Dbanded_chain_alignment_impl.h836 …TSeedSize horizontalNextGridOrigin = _max(0, static_cast<TSignedPosition>(beginPositionH(seed)) + … in _initializeBandedChain() local
1004 TPosH horizontalNextGridOrigin = beginPositionH(currentSeed) + 1 - bandExtension - gridBegin.i1; in _computeGapArea() local
1065 …TPosition horizontalNextGridOrigin = endPositionH(currentSeed) - bandExtension - _horizontalBandSh… in _computeAnchorArea() local
1144 …TPosition horizontalNextGridOrigin = _max(0, static_cast<TSignedPosition>(beginPositionH(currentSe… in _finishBandedChain() local
/dports/biology/seqan/seqan-library-2.4.0/include/seqan/seeds/
H A Dbanded_chain_alignment_impl.h836 …TSeedSize horizontalNextGridOrigin = _max(0, static_cast<TSignedPosition>(beginPositionH(seed)) + … in _initializeBandedChain() local
1004 TPosH horizontalNextGridOrigin = beginPositionH(currentSeed) + 1 - bandExtension - gridBegin.i1; in _computeGapArea() local
1065 …TPosition horizontalNextGridOrigin = endPositionH(currentSeed) - bandExtension - _horizontalBandSh… in _computeAnchorArea() local
1144 …TPosition horizontalNextGridOrigin = _max(0, static_cast<TSignedPosition>(beginPositionH(currentSe… in _finishBandedChain() local
/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/seeds/
H A Dbanded_chain_alignment_impl.h748 …TSeedSize horizontalNextGridOrigin = _max(0, static_cast<TSignedPosition>(beginPositionH(seed)) + … in _initializeBandedChain() local
912 TPosH horizontalNextGridOrigin = beginPositionH(currentSeed) + 1 - bandExtension - gridBegin.i1; in _computeGapArea() local
972 …TPosition horizontalNextGridOrigin = endPositionH(currentSeed) - bandExtension - _horizontalBandSh… in _computeAnchorArea() local
1050 …TPosition horizontalNextGridOrigin = _max(0, static_cast<TSignedPosition>(beginPositionH(currentSe… in _finishBandedChain() local