| /dports/java/java-subversion/subversion-1.14.1/subversion/bindings/javahl/native/ |
| H A D | org_apache_subversion_javahl_types_VersionExtended.cpp | 42 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_types_VersionExtended_dispose()
56 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_types_VersionExtended_getBuildDate()
67 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_types_VersionExtended_getBuildTime()
78 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_types_VersionExtended_getBuildHost()
89 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_types_VersionExtended_getCopyright()
100 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_types_VersionExtended_getRuntimeHost()
111 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_types_VersionExtended_getRuntimeOSName()
149 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_types_VersionExtended_00024LinkedLib_getName()
160 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_types_VersionExtended_00024LinkedLib_getCompiledVersion()
171 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_types_VersionExtended_00024LinkedLib_getRuntimeVersion()
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| H A D | org_apache_subversion_javahl_remote_RemoteSession.cpp | 40 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_remote_RemoteSession_finalize()
50 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_remote_RemoteSession_nativeDispose()
60 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_remote_RemoteSession_cancelOperation()
71 JNIEnv *env, jobject jthis, jstring jurl) in Java_org_apache_subversion_javahl_remote_RemoteSession_reparent()
82 JNIEnv *env, jobject jthis, jstring jurl) in Java_org_apache_subversion_javahl_remote_RemoteSession_getSessionRelativePath()
93 JNIEnv *env, jobject jthis, jstring jurl) in Java_org_apache_subversion_javahl_remote_RemoteSession_getReposRelativePath()
104 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_remote_RemoteSession_getSessionUrl()
115 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_remote_RemoteSession_getReposUUID()
126 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_remote_RemoteSession_getReposRootUrl()
137 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_remote_RemoteSession_getLatestRevision()
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| H A D | NativeStream.cpp | 137 void NativeInputStream::dispose(jobject jthis) in dispose()
220 JNIEnv* jenv, jobject jthis) in Java_org_apache_subversion_javahl_types_NativeInputStream_close()
232 JNIEnv* jenv, jobject jthis) in Java_org_apache_subversion_javahl_types_NativeInputStream_markSupported()
245 JNIEnv* jenv, jobject jthis, jint) in Java_org_apache_subversion_javahl_types_NativeInputStream_mark()
257 JNIEnv* jenv, jobject jthis) in Java_org_apache_subversion_javahl_types_NativeInputStream_reset()
269 JNIEnv* jenv, jobject jthis) in Java_org_apache_subversion_javahl_types_NativeInputStream_read__()
300 JNIEnv* jenv, jobject jthis, jlong jcount) in Java_org_apache_subversion_javahl_types_NativeInputStream_skip()
313 JNIEnv* jenv, jobject jthis) in Java_org_apache_subversion_javahl_types_NativeInputStream_finalize()
331 JNIEnv* jenv, jobject jthis) in Java_org_apache_subversion_javahl_types_NativeOutputStream_close()
343 JNIEnv* jenv, jobject jthis, jint byte) in Java_org_apache_subversion_javahl_types_NativeOutputStream_write__I()
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| H A D | org_apache_subversion_javahl_remote_CommitEditor.cpp | 38 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_remote_CommitEditor_finalize()
48 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_remote_CommitEditor_nativeDispose()
72 JNIEnv* env, jobject jthis, in Java_org_apache_subversion_javahl_remote_CommitEditor_addDirectory()
84 JNIEnv* env, jobject jthis, in Java_org_apache_subversion_javahl_remote_CommitEditor_addFile()
97 JNIEnv* env, jobject jthis, in Java_org_apache_subversion_javahl_remote_CommitEditor_addSymlink()
109 JNIEnv* env, jobject jthis, in Java_org_apache_subversion_javahl_remote_CommitEditor_addAbsent()
120 JNIEnv* env, jobject jthis, in Java_org_apache_subversion_javahl_remote_CommitEditor_alterDirectory()
131 JNIEnv* env, jobject jthis, in Java_org_apache_subversion_javahl_remote_CommitEditor_alterFile()
143 JNIEnv* env, jobject jthis, in Java_org_apache_subversion_javahl_remote_CommitEditor_alterSymlink()
154 JNIEnv* env, jobject jthis, in Java_org_apache_subversion_javahl_remote_CommitEditor_delete()
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| /dports/devel/py-subversion/subversion-1.14.1/subversion/bindings/javahl/native/ |
| H A D | org_apache_subversion_javahl_types_VersionExtended.cpp | 42 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_types_VersionExtended_dispose()
56 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_types_VersionExtended_getBuildDate()
67 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_types_VersionExtended_getBuildTime()
78 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_types_VersionExtended_getBuildHost()
89 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_types_VersionExtended_getCopyright()
100 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_types_VersionExtended_getRuntimeHost()
111 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_types_VersionExtended_getRuntimeOSName()
149 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_types_VersionExtended_00024LinkedLib_getName()
160 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_types_VersionExtended_00024LinkedLib_getCompiledVersion()
171 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_types_VersionExtended_00024LinkedLib_getRuntimeVersion()
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| H A D | org_apache_subversion_javahl_remote_RemoteSession.cpp | 40 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_remote_RemoteSession_finalize()
50 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_remote_RemoteSession_nativeDispose()
60 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_remote_RemoteSession_cancelOperation()
71 JNIEnv *env, jobject jthis, jstring jurl) in Java_org_apache_subversion_javahl_remote_RemoteSession_reparent()
82 JNIEnv *env, jobject jthis, jstring jurl) in Java_org_apache_subversion_javahl_remote_RemoteSession_getSessionRelativePath()
93 JNIEnv *env, jobject jthis, jstring jurl) in Java_org_apache_subversion_javahl_remote_RemoteSession_getReposRelativePath()
104 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_remote_RemoteSession_getSessionUrl()
115 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_remote_RemoteSession_getReposUUID()
126 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_remote_RemoteSession_getReposRootUrl()
137 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_remote_RemoteSession_getLatestRevision()
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| H A D | NativeStream.cpp | 137 void NativeInputStream::dispose(jobject jthis) in dispose()
220 JNIEnv* jenv, jobject jthis) in Java_org_apache_subversion_javahl_types_NativeInputStream_close()
232 JNIEnv* jenv, jobject jthis) in Java_org_apache_subversion_javahl_types_NativeInputStream_markSupported()
245 JNIEnv* jenv, jobject jthis, jint) in Java_org_apache_subversion_javahl_types_NativeInputStream_mark()
257 JNIEnv* jenv, jobject jthis) in Java_org_apache_subversion_javahl_types_NativeInputStream_reset()
269 JNIEnv* jenv, jobject jthis) in Java_org_apache_subversion_javahl_types_NativeInputStream_read__()
300 JNIEnv* jenv, jobject jthis, jlong jcount) in Java_org_apache_subversion_javahl_types_NativeInputStream_skip()
313 JNIEnv* jenv, jobject jthis) in Java_org_apache_subversion_javahl_types_NativeInputStream_finalize()
331 JNIEnv* jenv, jobject jthis) in Java_org_apache_subversion_javahl_types_NativeOutputStream_close()
343 JNIEnv* jenv, jobject jthis, jint byte) in Java_org_apache_subversion_javahl_types_NativeOutputStream_write__I()
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| H A D | org_apache_subversion_javahl_remote_CommitEditor.cpp | 38 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_remote_CommitEditor_finalize()
48 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_remote_CommitEditor_nativeDispose()
72 JNIEnv* env, jobject jthis, in Java_org_apache_subversion_javahl_remote_CommitEditor_addDirectory()
84 JNIEnv* env, jobject jthis, in Java_org_apache_subversion_javahl_remote_CommitEditor_addFile()
97 JNIEnv* env, jobject jthis, in Java_org_apache_subversion_javahl_remote_CommitEditor_addSymlink()
109 JNIEnv* env, jobject jthis, in Java_org_apache_subversion_javahl_remote_CommitEditor_addAbsent()
120 JNIEnv* env, jobject jthis, in Java_org_apache_subversion_javahl_remote_CommitEditor_alterDirectory()
131 JNIEnv* env, jobject jthis, in Java_org_apache_subversion_javahl_remote_CommitEditor_alterFile()
143 JNIEnv* env, jobject jthis, in Java_org_apache_subversion_javahl_remote_CommitEditor_alterSymlink()
154 JNIEnv* env, jobject jthis, in Java_org_apache_subversion_javahl_remote_CommitEditor_delete()
[all …]
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| /dports/security/subversion-gnome-keyring/subversion-1.14.1/subversion/bindings/javahl/native/ |
| H A D | org_apache_subversion_javahl_types_VersionExtended.cpp | 42 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_types_VersionExtended_dispose()
56 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_types_VersionExtended_getBuildDate()
67 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_types_VersionExtended_getBuildTime()
78 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_types_VersionExtended_getBuildHost()
89 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_types_VersionExtended_getCopyright()
100 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_types_VersionExtended_getRuntimeHost()
111 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_types_VersionExtended_getRuntimeOSName()
149 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_types_VersionExtended_00024LinkedLib_getName()
160 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_types_VersionExtended_00024LinkedLib_getCompiledVersion()
171 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_types_VersionExtended_00024LinkedLib_getRuntimeVersion()
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| H A D | org_apache_subversion_javahl_remote_RemoteSession.cpp | 40 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_remote_RemoteSession_finalize()
50 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_remote_RemoteSession_nativeDispose()
60 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_remote_RemoteSession_cancelOperation()
71 JNIEnv *env, jobject jthis, jstring jurl) in Java_org_apache_subversion_javahl_remote_RemoteSession_reparent()
82 JNIEnv *env, jobject jthis, jstring jurl) in Java_org_apache_subversion_javahl_remote_RemoteSession_getSessionRelativePath()
93 JNIEnv *env, jobject jthis, jstring jurl) in Java_org_apache_subversion_javahl_remote_RemoteSession_getReposRelativePath()
104 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_remote_RemoteSession_getSessionUrl()
115 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_remote_RemoteSession_getReposUUID()
126 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_remote_RemoteSession_getReposRootUrl()
137 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_remote_RemoteSession_getLatestRevision()
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| H A D | NativeStream.cpp | 137 void NativeInputStream::dispose(jobject jthis) in dispose()
220 JNIEnv* jenv, jobject jthis) in Java_org_apache_subversion_javahl_types_NativeInputStream_close()
232 JNIEnv* jenv, jobject jthis) in Java_org_apache_subversion_javahl_types_NativeInputStream_markSupported()
245 JNIEnv* jenv, jobject jthis, jint) in Java_org_apache_subversion_javahl_types_NativeInputStream_mark()
257 JNIEnv* jenv, jobject jthis) in Java_org_apache_subversion_javahl_types_NativeInputStream_reset()
269 JNIEnv* jenv, jobject jthis) in Java_org_apache_subversion_javahl_types_NativeInputStream_read__()
300 JNIEnv* jenv, jobject jthis, jlong jcount) in Java_org_apache_subversion_javahl_types_NativeInputStream_skip()
313 JNIEnv* jenv, jobject jthis) in Java_org_apache_subversion_javahl_types_NativeInputStream_finalize()
331 JNIEnv* jenv, jobject jthis) in Java_org_apache_subversion_javahl_types_NativeOutputStream_close()
343 JNIEnv* jenv, jobject jthis, jint byte) in Java_org_apache_subversion_javahl_types_NativeOutputStream_write__I()
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| H A D | org_apache_subversion_javahl_remote_CommitEditor.cpp | 38 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_remote_CommitEditor_finalize()
48 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_remote_CommitEditor_nativeDispose()
72 JNIEnv* env, jobject jthis, in Java_org_apache_subversion_javahl_remote_CommitEditor_addDirectory()
84 JNIEnv* env, jobject jthis, in Java_org_apache_subversion_javahl_remote_CommitEditor_addFile()
97 JNIEnv* env, jobject jthis, in Java_org_apache_subversion_javahl_remote_CommitEditor_addSymlink()
109 JNIEnv* env, jobject jthis, in Java_org_apache_subversion_javahl_remote_CommitEditor_addAbsent()
120 JNIEnv* env, jobject jthis, in Java_org_apache_subversion_javahl_remote_CommitEditor_alterDirectory()
131 JNIEnv* env, jobject jthis, in Java_org_apache_subversion_javahl_remote_CommitEditor_alterFile()
143 JNIEnv* env, jobject jthis, in Java_org_apache_subversion_javahl_remote_CommitEditor_alterSymlink()
154 JNIEnv* env, jobject jthis, in Java_org_apache_subversion_javahl_remote_CommitEditor_delete()
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| /dports/devel/p5-subversion/subversion-1.14.1/subversion/bindings/javahl/native/ |
| H A D | org_apache_subversion_javahl_types_VersionExtended.cpp | 42 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_types_VersionExtended_dispose()
56 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_types_VersionExtended_getBuildDate()
67 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_types_VersionExtended_getBuildTime()
78 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_types_VersionExtended_getBuildHost()
89 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_types_VersionExtended_getCopyright()
100 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_types_VersionExtended_getRuntimeHost()
111 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_types_VersionExtended_getRuntimeOSName()
149 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_types_VersionExtended_00024LinkedLib_getName()
160 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_types_VersionExtended_00024LinkedLib_getCompiledVersion()
171 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_types_VersionExtended_00024LinkedLib_getRuntimeVersion()
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| H A D | org_apache_subversion_javahl_remote_RemoteSession.cpp | 40 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_remote_RemoteSession_finalize()
50 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_remote_RemoteSession_nativeDispose()
60 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_remote_RemoteSession_cancelOperation()
71 JNIEnv *env, jobject jthis, jstring jurl) in Java_org_apache_subversion_javahl_remote_RemoteSession_reparent()
82 JNIEnv *env, jobject jthis, jstring jurl) in Java_org_apache_subversion_javahl_remote_RemoteSession_getSessionRelativePath()
93 JNIEnv *env, jobject jthis, jstring jurl) in Java_org_apache_subversion_javahl_remote_RemoteSession_getReposRelativePath()
104 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_remote_RemoteSession_getSessionUrl()
115 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_remote_RemoteSession_getReposUUID()
126 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_remote_RemoteSession_getReposRootUrl()
137 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_remote_RemoteSession_getLatestRevision()
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| H A D | NativeStream.cpp | 137 void NativeInputStream::dispose(jobject jthis) in dispose()
220 JNIEnv* jenv, jobject jthis) in Java_org_apache_subversion_javahl_types_NativeInputStream_close()
232 JNIEnv* jenv, jobject jthis) in Java_org_apache_subversion_javahl_types_NativeInputStream_markSupported()
245 JNIEnv* jenv, jobject jthis, jint) in Java_org_apache_subversion_javahl_types_NativeInputStream_mark()
257 JNIEnv* jenv, jobject jthis) in Java_org_apache_subversion_javahl_types_NativeInputStream_reset()
269 JNIEnv* jenv, jobject jthis) in Java_org_apache_subversion_javahl_types_NativeInputStream_read__()
300 JNIEnv* jenv, jobject jthis, jlong jcount) in Java_org_apache_subversion_javahl_types_NativeInputStream_skip()
313 JNIEnv* jenv, jobject jthis) in Java_org_apache_subversion_javahl_types_NativeInputStream_finalize()
331 JNIEnv* jenv, jobject jthis) in Java_org_apache_subversion_javahl_types_NativeOutputStream_close()
343 JNIEnv* jenv, jobject jthis, jint byte) in Java_org_apache_subversion_javahl_types_NativeOutputStream_write__I()
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| H A D | org_apache_subversion_javahl_remote_CommitEditor.cpp | 38 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_remote_CommitEditor_finalize()
48 JNIEnv *env, jobject jthis) in Java_org_apache_subversion_javahl_remote_CommitEditor_nativeDispose()
72 JNIEnv* env, jobject jthis, in Java_org_apache_subversion_javahl_remote_CommitEditor_addDirectory()
84 JNIEnv* env, jobject jthis, in Java_org_apache_subversion_javahl_remote_CommitEditor_addFile()
97 JNIEnv* env, jobject jthis, in Java_org_apache_subversion_javahl_remote_CommitEditor_addSymlink()
109 JNIEnv* env, jobject jthis, in Java_org_apache_subversion_javahl_remote_CommitEditor_addAbsent()
120 JNIEnv* env, jobject jthis, in Java_org_apache_subversion_javahl_remote_CommitEditor_alterDirectory()
131 JNIEnv* env, jobject jthis, in Java_org_apache_subversion_javahl_remote_CommitEditor_alterFile()
143 JNIEnv* env, jobject jthis, in Java_org_apache_subversion_javahl_remote_CommitEditor_alterSymlink()
154 JNIEnv* env, jobject jthis, in Java_org_apache_subversion_javahl_remote_CommitEditor_delete()
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| /dports/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk/language/java/ |
| H A D | jni_AlignmentItf.cpp | 54 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_AlignmentItf_GetFragmentId()
143 (JNIEnv * jenv, jobject jthis, jlong jself) in Java_ngs_itf_AlignmentItf_IsPaired()
190 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_AlignmentItf_GetAlignmentId()
219 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_AlignmentItf_GetReferenceSpec()
248 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_AlignmentItf_GetMappingQuality()
276 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_AlignmentItf_GetReferenceBases()
305 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_AlignmentItf_GetReadGroup()
334 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_AlignmentItf_GetReadId()
363 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_AlignmentItf_GetClippedFragmentBases()
392 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_AlignmentItf_GetClippedFragmentQualities()
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| H A D | jni_PileupItf.cpp | 60 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupItf_GetMappingQuality()
88 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupItf_GetAlignmentId()
117 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupItf_GetAlignmentPosition()
145 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupItf_GetFirstAlignmentPosition()
173 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupItf_GetLastAlignmentPosition()
201 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupItf_GetEventType()
229 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupItf_GetAlignmentBase()
257 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupItf_GetAlignmentQuality()
285 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupItf_GetInsertionBases()
314 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupItf_GetInsertionQualities()
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| H A D | jni_PileupEventItf.cpp | 52 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupEventItf_GetMappingQuality()
80 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupEventItf_GetAlignmentId()
109 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupEventItf_GetAlignmentPosition()
137 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupEventItf_GetFirstAlignmentPosition()
165 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupEventItf_GetLastAlignmentPosition()
193 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupEventItf_GetEventType()
221 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupEventItf_GetAlignmentBase()
249 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupEventItf_GetAlignmentQuality()
277 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupEventItf_GetInsertionBases()
306 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupEventItf_GetInsertionQualities()
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| /dports/biology/ncbi-vdb/ngs-2.11.0/ngs-sdk/language/java/ |
| H A D | jni_AlignmentItf.cpp | 54 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_AlignmentItf_GetFragmentId()
143 (JNIEnv * jenv, jobject jthis, jlong jself) in Java_ngs_itf_AlignmentItf_IsPaired()
190 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_AlignmentItf_GetAlignmentId()
219 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_AlignmentItf_GetReferenceSpec()
248 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_AlignmentItf_GetMappingQuality()
276 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_AlignmentItf_GetReferenceBases()
305 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_AlignmentItf_GetReadGroup()
334 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_AlignmentItf_GetReadId()
363 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_AlignmentItf_GetClippedFragmentBases()
392 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_AlignmentItf_GetClippedFragmentQualities()
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| H A D | jni_PileupItf.cpp | 60 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupItf_GetMappingQuality()
88 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupItf_GetAlignmentId()
117 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupItf_GetAlignmentPosition()
145 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupItf_GetFirstAlignmentPosition()
173 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupItf_GetLastAlignmentPosition()
201 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupItf_GetEventType()
229 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupItf_GetAlignmentBase()
257 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupItf_GetAlignmentQuality()
285 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupItf_GetInsertionBases()
314 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupItf_GetInsertionQualities()
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| H A D | jni_PileupEventItf.cpp | 52 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupEventItf_GetMappingQuality()
80 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupEventItf_GetAlignmentId()
109 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupEventItf_GetAlignmentPosition()
137 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupEventItf_GetFirstAlignmentPosition()
165 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupEventItf_GetLastAlignmentPosition()
193 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupEventItf_GetEventType()
221 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupEventItf_GetAlignmentBase()
249 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupEventItf_GetAlignmentQuality()
277 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupEventItf_GetInsertionBases()
306 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupEventItf_GetInsertionQualities()
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| /dports/biology/ngs-sdk/ngs-2.11.1/ngs-sdk/language/java/ |
| H A D | jni_AlignmentItf.cpp | 54 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_AlignmentItf_GetFragmentId()
143 (JNIEnv * jenv, jobject jthis, jlong jself) in Java_ngs_itf_AlignmentItf_IsPaired()
190 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_AlignmentItf_GetAlignmentId()
219 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_AlignmentItf_GetReferenceSpec()
248 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_AlignmentItf_GetMappingQuality()
276 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_AlignmentItf_GetReferenceBases()
305 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_AlignmentItf_GetReadGroup()
334 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_AlignmentItf_GetReadId()
363 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_AlignmentItf_GetClippedFragmentBases()
392 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_AlignmentItf_GetClippedFragmentQualities()
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| H A D | jni_PileupItf.cpp | 60 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupItf_GetMappingQuality()
88 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupItf_GetAlignmentId()
117 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupItf_GetAlignmentPosition()
145 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupItf_GetFirstAlignmentPosition()
173 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupItf_GetLastAlignmentPosition()
201 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupItf_GetEventType()
229 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupItf_GetAlignmentBase()
257 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupItf_GetAlignmentQuality()
285 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupItf_GetInsertionBases()
314 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupItf_GetInsertionQualities()
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| H A D | jni_PileupEventItf.cpp | 52 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupEventItf_GetMappingQuality()
80 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupEventItf_GetAlignmentId()
109 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupEventItf_GetAlignmentPosition()
137 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupEventItf_GetFirstAlignmentPosition()
165 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupEventItf_GetLastAlignmentPosition()
193 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupEventItf_GetEventType()
221 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupEventItf_GetAlignmentBase()
249 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupEventItf_GetAlignmentQuality()
277 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupEventItf_GetInsertionBases()
306 ( JNIEnv * jenv, jobject jthis, jlong jself ) in Java_ngs_itf_PileupEventItf_GetInsertionQualities()
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