| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/spark/sv/utils/ |
| H A D | SVKmer.java | 30 public abstract SVKmer successor( final Base base, final int kSize ); in successor()
31 public abstract SVKmer predecessor( final Base base, final int kSize ); in predecessor()
32 public abstract SVKmer reverseComplement( final int kSize ); in reverseComplement()
33 public abstract SVKmer canonical( final int kSize ); in canonical()
34 public abstract Base firstBase( final int kSize ); in firstBase()
36 public abstract int firstTrimer(final int kSize ); in firstTrimer()
38 public abstract String toString( final int kSize ); in toString()
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| H A D | SVKmerizer.java | 17 protected final int kSize, kAdvance; field in SVKmerizer
22 public SVKmerizer( final byte[] seq, final int kSize, SVKmer kmer ) { in SVKmerizer()
27 public SVKmerizer( final byte[] seq, final int kSize, final int kSpace, SVKmer kmer ) { in SVKmerizer()
31 public SVKmerizer( final CharSequence seq, final int kSize, SVKmer kmer ) { in SVKmerizer()
35 public SVKmerizer( final CharSequence seq, final int kSize, final int kSpace, SVKmer kmer ) { in SVKmerizer()
42 protected SVKmerizer( final int kSize, final CharSequence seq ) { in SVKmerizer()
46 protected SVKmerizer( final int kSize, final int kSpace, final CharSequence seq ) { in SVKmerizer()
75 …public static Stream<SVKmer> stream(final CharSequence seq, final int kSize, final int kSpace, fin… in stream()
79 …public static Stream<SVKmer> stream(final byte[] seq, final int kSize, final int kSpace, SVKmer km… in stream()
83 public static Stream<SVKmer> stream(final byte[] seq, final int kSize, SVKmer kmer ) { in stream()
[all …]
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| H A D | SVKmerShort.java | 30 public SVKmerShort( final int kSize ) { in SVKmerShort()
57 public final SVKmerShort successor( final Base base, final int kSize ) { in successor()
72 public final SVKmerShort predecessor( final Base base, final int kSize ) { in predecessor()
85 public final SVKmerShort reverseComplement(final int kSize) { in reverseComplement()
101 public SVKmerShort canonical( final int kSize ) { in canonical()
109 …public final Base firstBase( final int kSize ) { return Base.values()[(int)(valLow >> (kSize*2-2))… in firstBase()
111 public final int firstTrimer(final int kSize ) { return (int)(valLow >>> (kSize*2-6)); } in firstTrimer()
139 public static SVKmerShort getMask(final byte[] positions, final int kSize) { in getMask()
154 public final String toString(final int kSize) { in toString()
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| H A D | SVDUSTFilteredKmerizer.java | 25 …public SVDUSTFilteredKmerizer(final byte[] seq, final int kSize, final int maxDUSTScore, final SVK… in SVDUSTFilteredKmerizer()
29 …public SVDUSTFilteredKmerizer(final CharSequence seq, final int kSize, final int maxDUSTScore, fin… in SVDUSTFilteredKmerizer()
45 …public static Stream<SVKmer> stream( final CharSequence seq, final int kSize, final int maxDUSTSco… in stream()
49 …public static Stream<SVKmer> stream( final byte[] seq, final int kSize, final int maxDUSTScore, fi… in stream()
53 …public static Stream<SVKmer> canonicalStream( final CharSequence seq, final int kSize, final int m… in canonicalStream()
57 …public static Stream<SVKmer> canonicalStream( final byte[] seq, final int kSize, final int maxDUST… in canonicalStream()
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| H A D | SVKmerLong.java | 28 public SVKmerLong( final int kSize ) { in SVKmerLong()
58 public final SVKmerLong successor( final Base base, final int kSize ) { in successor()
73 public final SVKmerLong predecessor( final Base base, final int kSize ) { in predecessor()
87 public final SVKmerLong reverseComplement( final int kSize ) { in reverseComplement()
113 public SVKmerLong canonical( final int kSize ) { in canonical()
122 …public final Base firstBase( final int kSize ) { return Base.values()[(int)(valHigh >> (kSize-2))]… in firstBase()
124 public final int firstTrimer(final int kSize ) { return (int)(valHigh >>> (kSize-6)); } in firstTrimer()
154 public final String toString( final int kSize ) { in toString()
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| /dports/www/node10/node-v10.24.1/deps/v8/src/objects/ |
| H A D | intl-objects.h | 47 static const int kSize = kSimpleDateFormat + kPointerSize; variable
72 static const int kSize = kDecimalFormat + kPointerSize; variable
93 static const int kSize = kCollator + kPointerSize; variable
130 static const int kSize = kNumberFormat + kPointerSize; variable
156 static const int kSize = kUnicodeString + kPointerSize; variable
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| H A D | promise.h | 37 static const int kSize = kPromiseOrCapabilityOffset + kPointerSize; variable
83 static const int kSize = kThenableOffset + kPointerSize; variable
104 static const int kSize = kRejectOffset + kPointerSize; variable
148 static const int kSize = kPromiseOrCapabilityOffset + kPointerSize; variable
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| H A D | arguments.h | 24 static const int kSize = kLengthOffset + kPointerSize; variable
41 static const int kSize = kCalleeOffset + kPointerSize; variable
128 static const int kSize = kAliasedContextSlot + kPointerSize; variable
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| H A D | microtask.h | 39 static const int kSize = kDataOffset + kPointerSize; variable
60 static const int kSize = kContextOffset + kPointerSize; variable
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| H A D | js-array.h | 82 static const int kSize = kLengthOffset + kPointerSize; variable
126 static const int kSize = kKindOffset + kPointerSize; variable
228 static const int kSize = kBitFieldSlot + kPointerSize; variable
311 static const int kSize = kLengthOffset + kPointerSize; variable
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| /dports/lang/v8/v8-9.6.180.12/test/unittests/heap/cppgc/ |
| H A D | heap-object-header-unittest.cc | 22 constexpr size_t kSize = kAllocationGranularity; in TEST() local
32 constexpr size_t kSize = kAllocationGranularity; in TEST() local
40 constexpr size_t kSize = kAllocationGranularity; in TEST() local
48 constexpr size_t kSize = kAllocationGranularity; in TEST() local
56 constexpr size_t kSize = kAllocationGranularity * 23; in TEST() local
64 constexpr size_t kSize = kAllocationGranularity * 23; in TEST() local
75 constexpr size_t kSize = kAllocationGranularity; in TEST() local
87 constexpr size_t kSize = kAllocationGranularity * 7; in TEST() local
103 constexpr size_t kSize = kAllocationGranularity * 7; in TEST() local
154 constexpr size_t kSize = in TEST() local
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| /dports/www/qt5-webengine/qtwebengine-everywhere-src-5.15.2/src/3rdparty/chromium/third_party/blink/renderer/platform/graphics/ |
| H A D | canvas_resource_provider_test.cc | 76 const IntSize kSize(10, 10); in TEST_F() local
107 const IntSize kSize(10, 10); in TEST_F() local
133 const IntSize kSize(10, 10); in TEST_F() local
164 const IntSize kSize(10, 10); in TEST_F() local
220 const IntSize kSize(10, 10); in TEST_F() local
268 const IntSize kSize(10, 10); in TEST_F() local
291 const IntSize kSize(10, 10); in TEST_F() local
313 const IntSize kSize(10, 10); in TEST_F() local
348 const IntSize kSize(10, 10); in TEST_F() local
380 const IntSize kSize(10, 10); in TEST_F() local
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| /dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/blink/renderer/platform/graphics/ |
| H A D | canvas_resource_provider_test.cc | 76 const IntSize kSize(10, 10); in TEST_F() local
109 const IntSize kSize(10, 10); in TEST_F() local
136 const IntSize kSize(10, 10); in TEST_F() local
168 const IntSize kSize(10, 10); in TEST_F() local
224 const IntSize kSize(10, 10); in TEST_F() local
273 const IntSize kSize(10, 10); in TEST_F() local
297 const IntSize kSize(10, 10); in TEST_F() local
320 const IntSize kSize(10, 10); in TEST_F() local
352 const IntSize kSize(10, 10); in TEST_F() local
386 const IntSize kSize(10, 10); in TEST_F() local
[all …]
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| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/spark/sv/evidence/ |
| H A D | QNameIntervalFinder.java | 20 private final int kSize; field in QNameIntervalFinder
23 …public QNameIntervalFinder( final int kSize, final HopscotchUniqueMultiMap<SVKmer, Integer, KmerAn… in QNameIntervalFinder()
31 SVKmerizer.canonicalStream(read.getBases(), kSize, new SVKmerLong()) in apply() local
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| H A D | QNamesForKmersFinder.java | 21 private final int kSize; field in QNamesForKmersFinder
25 public QNamesForKmersFinder( final int kSize, in QNamesForKmersFinder()
38 SVKmerizer.canonicalStream(read.getBases(), kSize, new SVKmerLong()) in apply() local
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| H A D | KmerCounter.java | 18 private final int kSize; field in KmerCounter
22 public KmerCounter( final int kSize, final int kmersPerPartitionGuess, in KmerCounter()
33 SVKmerizer.canonicalStream(read.getBases(), kSize, new SVKmerLong()) in apply() local
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| H A D | QNameKmerizer.java | 23 private final int kSize; field in QNameKmerizer
29 final Set<SVKmer> kmersToIgnore, final int kSize, final int maxDUSTScore, in QNameKmerizer()
46 … SVDUSTFilteredKmerizer.canonicalStream(read.getBases(), kSize, maxDUSTScore, new SVKmerLong()) in apply() local
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| H A D | FindBadGenomicKmersSpark.java | 85 …private int kSize = StructuralVariationDiscoveryArgumentCollection.FindBreakpointEvidenceSparkArgu… field in FindBadGenomicKmersSpark
117 final int kSize, in findBadGenomicKmers()
137 static List<SVKmer> collectUbiquitousKmersInReference(final int kSize, in collectUbiquitousKmersInReference()
181 @VisibleForTesting static List<SVKmer> processFasta( final int kSize, in processFasta()
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| /dports/www/qt5-webengine/qtwebengine-everywhere-src-5.15.2/src/3rdparty/chromium/gpu/command_buffer/client/ |
| H A D | fenced_allocator_test.cc | 96 const unsigned int kSize = 16; in TEST_F() local
120 const unsigned int kSize = 16; in TEST_F() local
162 const unsigned int kSize = 16; in TEST_F() local
210 const unsigned int kSize = 16; in TEST_F() local
280 const unsigned int kSize = 16; in TEST_F() local
323 const unsigned int kSize = 16; in TEST_F() local
408 const unsigned int kSize = 16; in TEST_F() local
474 const unsigned int kSize = 16; in TEST_F() local
514 const unsigned int kSize = 16; in TEST_F() local
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| /dports/www/chromium-legacy/chromium-88.0.4324.182/gpu/command_buffer/client/ |
| H A D | fenced_allocator_test.cc | 96 const unsigned int kSize = 16; in TEST_F() local
120 const unsigned int kSize = 16; in TEST_F() local
162 const unsigned int kSize = 16; in TEST_F() local
210 const unsigned int kSize = 16; in TEST_F() local
280 const unsigned int kSize = 16; in TEST_F() local
323 const unsigned int kSize = 16; in TEST_F() local
408 const unsigned int kSize = 16; in TEST_F() local
474 const unsigned int kSize = 16; in TEST_F() local
514 const unsigned int kSize = 16; in TEST_F() local
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| /dports/www/qt5-webengine/qtwebengine-everywhere-src-5.15.2/src/3rdparty/chromium/third_party/angle/src/libANGLE/ |
| H A D | ResourceMap_unittest.cpp | 21 constexpr size_t kSize = 64; in TEST() local
42 constexpr size_t kSize = 64; in TEST() local
57 constexpr size_t kSize = 8; in TEST() local
89 constexpr size_t kSize = 8; in TEST() local
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| /dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/angle/src/libANGLE/ |
| H A D | ResourceMap_unittest.cpp | 21 constexpr size_t kSize = 64; in TEST() local
42 constexpr size_t kSize = 64; in TEST() local
57 constexpr size_t kSize = 8; in TEST() local
89 constexpr size_t kSize = 8; in TEST() local
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| /dports/lang/v8/v8-9.6.180.12/test/unittests/base/ |
| H A D | region-allocator-unittest.cc | 21 const size_t kSize = kPageSize * kPageCount; in TEST() local
55 const size_t kSize = kPageSize * kPageCount; in TEST() local
84 const size_t kSize = kPageSize * kPageCount; in TEST() local
106 const size_t kSize = kPageSize * kPageCount; in TEST() local
150 const size_t kSize = kPageSize * kPageCount; in TEST() local
180 const size_t kSize = kPageSize * kPageCount; in TEST() local
215 const size_t kSize = kPageSize * kPageCount; in TEST() local
262 const size_t kSize = kPageSize * kPageCount; in TEST() local
309 const size_t kSize = kPageSize * kPageCount; in TEST() local
348 const size_t kSize = kPageSize * kPageCount; in TEST() local
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| /dports/biology/hhsuite/hh-suite-3.3.0/src/cs/ |
| H A D | as.cc | 26 const size_t AS62::kSize = 62; member in cs::AS62
92 const size_t AS90::kSize = 90; member in cs::AS90
160 const size_t AS219::kSize = 219; member in cs::AS219
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| /dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/angle/src/tests/gl_tests/ |
| H A D | MultisampledRenderToTextureTest.cpp | 525 constexpr GLsizei kSize = 6; in colorAttachmentMultisampleDrawTestCommon() local
590 constexpr GLsizei kSize = 6; variable
661 constexpr GLsizei kSize = 6; in readPixelsTestCommon() local
711 constexpr GLsizei kSize = 16; in copyTexImageTestCommon() local
760 constexpr GLsizei kSize = 16; in copyTexSubImageTestCommon() local
845 constexpr GLsizei kSize = 16; in blitFramebufferTestCommon() local
927 constexpr GLsizei kSize = 64; in TEST_P() local
974 constexpr GLsizei kSize = 64; in drawCopyThenBlendCommon() local
1048 constexpr GLsizei kSize = 64; in clearDrawCopyThenBlendSameProgramCommon() local
1148 constexpr GLsizei kSize = 64; in TEST_P() local
[all …]
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