| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/format/ |
| H A D | data4xmlformat.cpp | 242 const Blast_KarlinBlk *kbp = in GetLambda() local
260 const Blast_KarlinBlk *kbp = in GetKappa() local
278 const Blast_KarlinBlk *kbp = in GetEntropy() local
|
| H A D | data4xml2format.cpp | 264 const Blast_KarlinBlk *kbp = in GetLambda() local
282 const Blast_KarlinBlk *kbp = in GetKappa() local
300 const Blast_KarlinBlk *kbp = in GetEntropy() local
|
| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/format/ |
| H A D | data4xmlformat.cpp | 242 const Blast_KarlinBlk *kbp = in GetLambda() local
260 const Blast_KarlinBlk *kbp = in GetKappa() local
278 const Blast_KarlinBlk *kbp = in GetEntropy() local
|
| H A D | data4xml2format.cpp | 264 const Blast_KarlinBlk *kbp = in GetLambda() local
282 const Blast_KarlinBlk *kbp = in GetKappa() local
300 const Blast_KarlinBlk *kbp = in GetEntropy() local
|
| /dports/biology/ncbi-toolkit/ncbi/algo/blast/core/ |
| H A D | blast_parameters.c | 43 static Boolean s_BlastKarlinBlkIsValid(const Blast_KarlinBlk* kbp) in s_BlastKarlinBlkIsValid()
167 Blast_KarlinBlk* kbp; in BlastInitialWordParametersNew() local
318 Blast_KarlinBlk* kbp; in BlastInitialWordParametersUpdate() local
432 Blast_KarlinBlk* kbp = NULL; in BlastExtensionParametersNew() local
905 Blast_KarlinBlk* kbp; in BlastHitSavingParametersUpdate() local
997 Blast_KarlinBlk* kbp = NULL; in CalculateLinkHSPCutoffs() local
|
| H A D | blast_setup.c | 140 Blast_KarlinBlk* kbp; in s_PHIScoreBlkFill() local
400 Blast_KarlinBlk* kbp; in s_JumperScoreBlkFill() local
773 Blast_KarlinBlk *kbp; /* statistical parameters for the current context */ in BLAST_CalcEffLengths() local
|
| H A D | blast_stat.c | 956 Blast_KarlinBlkFree(Blast_KarlinBlk* kbp) in Blast_KarlinBlkFree()
2698 Blast_KarlinBlkUngappedCalc(Blast_KarlinBlk* kbp, Blast_ScoreFreq* sfp) in Blast_KarlinBlkUngappedCalc()
2767 Blast_KarlinBlk* kbp; in Blast_ScoreBlkKbpUngappedCalc() local
2863 Blast_KarlinBlk* kbp; in Blast_KarlinBlkNew() local
3835 Blast_KarlinBlkNuclGappedCalc(Blast_KarlinBlk* kbp, Int4 gap_open, in Blast_KarlinBlkNuclGappedCalc()
3949 Int4 gap_extend, Blast_KarlinBlk* kbp, in Blast_GetNuclAlphaBeta()
4024 const Blast_KarlinBlk* kbp, in BlastKarlinEtoS_simple()
4075 Blast_KarlinBlk* kbp, in BLAST_Cutoffs()
4141 Blast_KarlinBlk* kbp, in BLAST_KarlinStoE_simple()
5160 Blast_KarlinBlk* kbp, in BLAST_SpougeStoE()
[all …]
|
| H A D | blast_stat.h | 153 Blast_KarlinBlk* kbp; /**< Karlin-Altschul block associated with this member
207 Blast_KarlinBlk** kbp; /**< Karlin-Altschul parameters. Actually just a placeholder. */ member
|
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/core/ |
| H A D | blast_parameters.c | 43 static Boolean s_BlastKarlinBlkIsValid(const Blast_KarlinBlk* kbp) in s_BlastKarlinBlkIsValid()
167 Blast_KarlinBlk* kbp; in BlastInitialWordParametersNew() local
318 Blast_KarlinBlk* kbp; in BlastInitialWordParametersUpdate() local
432 Blast_KarlinBlk* kbp = NULL; in BlastExtensionParametersNew() local
909 Blast_KarlinBlk* kbp; in BlastHitSavingParametersUpdate() local
1001 Blast_KarlinBlk* kbp = NULL; in CalculateLinkHSPCutoffs() local
|
| H A D | blast_setup.c | 140 Blast_KarlinBlk* kbp; in s_PHIScoreBlkFill() local
400 Blast_KarlinBlk* kbp; in s_JumperScoreBlkFill() local
773 Blast_KarlinBlk *kbp; /* statistical parameters for the current context */ in BLAST_CalcEffLengths() local
|
| H A D | blast_stat.c | 956 Blast_KarlinBlkFree(Blast_KarlinBlk* kbp) in Blast_KarlinBlkFree()
2698 Blast_KarlinBlkUngappedCalc(Blast_KarlinBlk* kbp, Blast_ScoreFreq* sfp) in Blast_KarlinBlkUngappedCalc()
2767 Blast_KarlinBlk* kbp; in Blast_ScoreBlkKbpUngappedCalc() local
2863 Blast_KarlinBlk* kbp; in Blast_KarlinBlkNew() local
3835 Blast_KarlinBlkNuclGappedCalc(Blast_KarlinBlk* kbp, Int4 gap_open, in Blast_KarlinBlkNuclGappedCalc()
3949 Int4 gap_extend, Blast_KarlinBlk* kbp, in Blast_GetNuclAlphaBeta()
4024 const Blast_KarlinBlk* kbp, in BlastKarlinEtoS_simple()
4075 Blast_KarlinBlk* kbp, in BLAST_Cutoffs()
4141 Blast_KarlinBlk* kbp, in BLAST_KarlinStoE_simple()
5160 Blast_KarlinBlk* kbp, in BLAST_SpougeStoE()
[all …]
|
| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/core/ |
| H A D | blast_parameters.c | 43 static Boolean s_BlastKarlinBlkIsValid(const Blast_KarlinBlk* kbp) in s_BlastKarlinBlkIsValid()
167 Blast_KarlinBlk* kbp; in BlastInitialWordParametersNew() local
318 Blast_KarlinBlk* kbp; in BlastInitialWordParametersUpdate() local
432 Blast_KarlinBlk* kbp = NULL; in BlastExtensionParametersNew() local
909 Blast_KarlinBlk* kbp; in BlastHitSavingParametersUpdate() local
1001 Blast_KarlinBlk* kbp = NULL; in CalculateLinkHSPCutoffs() local
|
| H A D | blast_setup.c | 140 Blast_KarlinBlk* kbp; in s_PHIScoreBlkFill() local
400 Blast_KarlinBlk* kbp; in s_JumperScoreBlkFill() local
773 Blast_KarlinBlk *kbp; /* statistical parameters for the current context */ in BLAST_CalcEffLengths() local
|
| H A D | blast_stat.c | 956 Blast_KarlinBlkFree(Blast_KarlinBlk* kbp) in Blast_KarlinBlkFree()
2698 Blast_KarlinBlkUngappedCalc(Blast_KarlinBlk* kbp, Blast_ScoreFreq* sfp) in Blast_KarlinBlkUngappedCalc()
2767 Blast_KarlinBlk* kbp; in Blast_ScoreBlkKbpUngappedCalc() local
2863 Blast_KarlinBlk* kbp; in Blast_KarlinBlkNew() local
3835 Blast_KarlinBlkNuclGappedCalc(Blast_KarlinBlk* kbp, Int4 gap_open, in Blast_KarlinBlkNuclGappedCalc()
3949 Int4 gap_extend, Blast_KarlinBlk* kbp, in Blast_GetNuclAlphaBeta()
4024 const Blast_KarlinBlk* kbp, in BlastKarlinEtoS_simple()
4075 Blast_KarlinBlk* kbp, in BLAST_Cutoffs()
4141 Blast_KarlinBlk* kbp, in BLAST_KarlinStoE_simple()
5160 Blast_KarlinBlk* kbp, in BLAST_SpougeStoE()
[all …]
|
| /dports/math/libsemigroups/libsemigroups-1.3.7/src/ |
| H A D | cong.cpp | 145 KnuthBendixCongruenceByPairs* kbp in Congruence() local
271 KnuthBendixCongruenceByPairs kbp(kind(), ptr->knuth_bendix()); in non_trivial_classes_impl() local
|
| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/unit_tests/api/ |
| H A D | stat_unit_test.cpp | 46 Blast_KarlinBlk* kbp = NULL; in BOOST_AUTO_TEST_CASE() local
|
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/unit_tests/api/ |
| H A D | stat_unit_test.cpp | 46 Blast_KarlinBlk* kbp = NULL; in BOOST_AUTO_TEST_CASE() local
|
| /dports/biology/ncbi-toolkit/ncbi/tools/ |
| H A D | blastkar.c | 1780 BLAST_KarlinBlkPtr kbp_ideal, kbp; in BlastKarlinBlkStandardCalc() local
1809 BLAST_KarlinBlkPtr kbp; in BlastKarlinBlkCreate() local
1821 BlastKarlinBlkDestruct(BLAST_KarlinBlkPtr kbp) in BlastKarlinBlkDestruct()
4341 BLAST_KarlinBlkPtr kbp, in BlastCutoffs()
4407 BLAST_KarlinBlkPtr kbp, in BlastKarlinEtoS()
4422 BLAST_KarlinBlkPtr kbp, in BlastKarlinEtoS_simple()
4453 BLAST_KarlinBlkPtr kbp, in BlastKarlinStoP()
4462 BLAST_KarlinBlkPtr kbp, in BlastKarlinStoP_simple()
4482 BLAST_KarlinBlkPtr kbp, in BlastKarlinStoE()
4491 BLAST_KarlinBlkPtr kbp, in BlastKarlinStoE_simple()
[all …]
|
| /dports/sysutils/vector/vector-0.10.0/cargo-crates/krb5-src-0.2.4+1.18.2/krb5/src/lib/crypto/crypto_tests/ |
| H A D | t_cksums.c | 188 krb5_keyblock kb, *kbp; in main() local
|
| /dports/security/krb5/krb5-1.19.2/src/lib/crypto/crypto_tests/ |
| H A D | t_cksums.c | 188 krb5_keyblock kb, *kbp; in main() local
|
| /dports/biology/ncbi-toolkit/ncbi/demo/ |
| H A D | profiles.c | 260 BLAST_KarlinBlkPtr kbp, Char *sequenceFileName) in readkbp()
297 Int4 bestScore, BLAST_KarlinBlkPtr kbp) in scoreToEvalue()
319 Int4 bestScore, Nlm_FloatHi LambdaRatio, BLAST_KarlinBlkPtr kbp) in estimateEvalue()
510 BLAST_KarlinBlkPtr kbp, Nlm_FloatHi L, Nlm_FloatHi effSearchSpace, in basicSmithWatermanScoreOnly()
706 BLAST_KarlinBlkPtr kbp, Nlm_FloatHi L, Nlm_FloatHi effSearchSpace, in specialSmithWatermanScoreOnly()
992 BLAST_KarlinBlkPtr kbp; /*stores Karlin-Altschul parameters*/ in findMatchingProfiles() local
|
| /dports/biology/infernal/infernal-1.1.3/hmmer/src/ |
| H A D | generic_fwdback_banded.c | 27 int kap, kbp; /* previous row band is kap..kbp */ in p7_GForwardBanded() local
|
| /dports/biology/hmmer/hmmer-3.3/src/ |
| H A D | generic_fwdback_banded.c | 27 int kap, kbp; /* previous row band is kap..kbp */ in p7_GForwardBanded() local
|
| /dports/biology/diamond/diamond-2.0.13/src/lib/blast/ |
| H A D | blast_stat.h | 151 Blast_KarlinBlk* kbp; /**< Karlin-Altschul block associated with this member
205 Blast_KarlinBlk** kbp; /**< Karlin-Altschul parameters. Actually just a placeholder. */ member
|
| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/algo/blast/core/ |
| H A D | blast_stat.h | 153 Blast_KarlinBlk* kbp; /**< Karlin-Altschul block associated with this member
207 Blast_KarlinBlk** kbp; /**< Karlin-Altschul parameters. Actually just a placeholder. */ member
|