Home
last modified time | relevance | path

Searched defs:kmerGenerator (Results 1 – 3 of 3) sorted by relevance

/dports/biology/mmseqs2/MMseqs2-13-45111/src/prefiltering/
H A DIndexTable.h97 size_t addSimilarKmerCount(Sequence* s, KmerGenerator* kmerGenerator){ in addSimilarKmerCount()
298 …void addSimilarSequence(Sequence* s, KmerGenerator* kmerGenerator, IndexEntryLocalTmp ** buffer, s… in addSimilarSequence()
H A DQueryMatcher.h139 KmerGenerator *kmerGenerator; variable
/dports/biology/mmseqs2/MMseqs2-13-45111/src/util/
H A Dalignbykmer.cpp170 KmerGenerator kmerGenerator(par.kmerSize, subMat->alphabetSize, 70.0); in alignbykmer() local