Searched defs:kmerGenerator (Results 1 – 3 of 3) sorted by relevance
97 size_t addSimilarKmerCount(Sequence* s, KmerGenerator* kmerGenerator){ in addSimilarKmerCount()298 …void addSimilarSequence(Sequence* s, KmerGenerator* kmerGenerator, IndexEntryLocalTmp ** buffer, s… in addSimilarSequence()
139 KmerGenerator *kmerGenerator; variable
170 KmerGenerator kmerGenerator(par.kmerSize, subMat->alphabetSize, 70.0); in alignbykmer() local