| /dports/biology/seqan1/seqan-1.3.1/seqan/graph_msa/ |
| H A D | graph_align_tcoffee_kmer.h | 49 TKTup const ktup, in _getTupelString()
91 TSize ktup, in getKmerSimilarityMatrix()
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| H A D | graph_align_tcoffee_distance.h | 141 TSize ktup, in getDistanceMatrix()
164 TSize ktup, in getDistanceMatrix()
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| H A D | graph_align_tcoffee_library.h | 255 TSize ktup, in appendSegmentMatches()
315 TSize ktup, in appendSegmentMatches()
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| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/graph_msa/ |
| H A D | graph_align_tcoffee_kmer.h | 49 TKTup const ktup, in _getTupelString()
91 TSize ktup, in getKmerSimilarityMatrix()
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| H A D | graph_align_tcoffee_distance.h | 143 TSize ktup, in getDistanceMatrix()
165 TSize ktup, in getDistanceMatrix()
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| H A D | graph_align_tcoffee_library.h | 656 TSize ktup, in appendSegmentMatches()
715 TSize ktup, in appendSegmentMatches()
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/graph_msa/ |
| H A D | graph_align_tcoffee_kmer.h | 49 TKTup const ktup, in _getTupelString()
91 TSize ktup, in getKmerSimilarityMatrix()
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| H A D | graph_align_tcoffee_distance.h | 143 TSize ktup, in getDistanceMatrix()
165 TSize ktup, in getDistanceMatrix()
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| H A D | graph_align_tcoffee_library.h | 656 TSize ktup, in appendSegmentMatches()
715 TSize ktup, in appendSegmentMatches()
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| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/graph_msa/ |
| H A D | graph_align_tcoffee_kmer.h | 49 TKTup const ktup, in _getTupelString()
92 TSize ktup, in getKmerSimilarityMatrix()
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| H A D | graph_align_tcoffee_distance.h | 143 TSize ktup, in getDistanceMatrix()
165 TSize ktup, in getDistanceMatrix()
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| H A D | graph_align_tcoffee_library.h | 619 TSize ktup, in appendSegmentMatches()
678 TSize ktup, in appendSegmentMatches()
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| /dports/biology/clustal-omega/clustal-omega-1.2.4/src/clustal/ |
| H A D | ktuple_pair.h | 32 int ktup; member
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| H A D | ktuple_pair.c | 172 make_ptrs(int *tptr, int *pl, const int naseq, const int l, const int ktup, const int max_res_code,… in make_ptrs()
260 frag_rel_pos(int a1, int b1, int a2, int b2, int ktup) in frag_rel_pos()
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| /dports/biology/p5-BioPerl-Run/BioPerl-Run-1.007003/lib/Bio/Tools/Run/Alignment/ |
| H A D | StandAloneFasta.pm | 446 sub ktup { subroutine
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| /dports/biology/emboss/EMBOSS-6.6.0/emboss/ |
| H A D | emma.c | 61 ajint ktup; in main() local
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| /dports/science/PETSc/petsc-3.14.1/src/dm/dt/tests/ |
| H A D | ex9.c | 46 PetscInt *degtup, *ktup; in testDerivativesLegendre() local
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| /dports/biology/fasta/fasta/ |
| H A D | relate.c | 37 int ktup; variable
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| H A D | prdf.c | 148 static int ktup, kshft, kt1; /* ktuple constants */ variable
536 hashaa(aa0, n0, ktup) in hashaa() argument
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| H A D | fffasta.c | 356 static int ktup, kshft, kt1; /* ktuple constants */ variable
1290 hashaa(aa0, n0, ktup) in hashaa() argument
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| /dports/biology/fasta3/fasta-36.3.8/src/ |
| H A D | dropfs2.c | 109 int ktup, fact, kt1; in init_work() local
599 int ktup; in do_fasts() local
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| H A D | dropnfa.c | 134 int ktup; /* word size examined */ in init_work() local
584 int ktup, kt1, lkt, ip, ktup_sq; in do_fasta() local
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| H A D | param.h | 15 int ktup; member
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| /dports/security/hs-cryptol/cryptol-2.11.0/_cabal_deps/sbv-8.12/Data/SBV/ |
| H A D | Tuple.hs | 67 where ktup = kindOf tup function
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| /dports/biology/clustalw/clustalw-2.1/src/general/ |
| H A D | UserParameters.h | 439 int ktup; variable
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