| /dports/biology/mafft/mafft-7.267-without-extensions/core/ |
| H A D | MSalign11.c | 53 int i, j, l, iin, jin, ifi, jfi, lgth1, lgth2, k, limk; in Atracking() local
121 void backdp( double **WMMTX, double wmmax, double *maxinw, double *maxinh, int lgth1, int lgth2, in… in backdp()
290 int lgth1, lgth2; in MSalign11() local
|
| H A D | SAalignmm.c | 55 int i, j, k, l, iin, jin, ifi, jfi, lgth1, lgth2; in Atracking() local
164 int lgth1, lgth2; in Aalign() local
|
| H A D | Galign11.c | 34 int i, j, l, iin, jin, ifi, jfi, lgth1, lgth2, k, limk; in Atracking() local
171 int lgth1, lgth2; in G__align11() local
693 int lgth1, lgth2; in G__align11_noalign() local
|
| H A D | Lalign11.c | 97 int i, j, l, iin, jin, lgth1, lgth2, k, limk; in Ltracking() local
214 int lgth1, lgth2; in L__align11() local
754 int lgth1, lgth2; in L__align11_noalign() local
|
| H A D | Salignmm.c | 39 static void imp_match_out_vead_tate_gapmap( double *imp, int j1, int lgth1, int *gapmap1 ) in imp_match_out_vead_tate_gapmap()
66 static void imp_match_out_vead_tate( double *imp, int j1, int lgth1 ) in imp_match_out_vead_tate()
78 void imp_match_init_strict( double *imp, int clus1, int clus2, int lgth1, int lgth2, char **seq1, c… in imp_match_init_strict()
747 int i, j, l, iin, jin, ifi, jfi, lgth1, lgth2, k, limk; in Atracking_localhom() local
887 int i, j, l, iin, jin, ifi, jfi, lgth1, lgth2, k, limk; in Atracking() local
1021 int lgth1, lgth2; in A__align() local
1788 int lgth1, lgth2; in A__align_variousdist() local
|
| H A D | partSalignmm.c | 87 static void part_imp_match_out_vead_tate_gapmap( double *imp, int j1, int lgth1, int start1, int *g… in part_imp_match_out_vead_tate_gapmap()
103 void part_imp_match_init_strict( double *imp, int clus1, int clus2, int lgth1, int lgth2, char **se… in part_imp_match_init_strict()
278 void part_imp_match_init( double *imp, int clus1, int clus2, int lgth1, int lgth2, char **seq1, cha… in part_imp_match_init()
675 int i, j, l, iin, jin, ifi, jfi, lgth1, lgth2, k, limk; in Atracking_localhom() local
821 int i, j, l, iin, jin, ifi, jfi, lgth1, lgth2, k, lastk, limk; in Atracking() local
963 int lgth1, lgth2; in partA__align() local
1651 int lgth1, lgth2; in partA__align_variousdist() local
|
| H A D | genalign11.c | 36 int i, j, l, iin, jin, lgth1, lgth2, k, limk; in gentracking() local
119 int lgth1, lgth2; in genL__align11() local
|
| H A D | Lalignmm.c | 384 int lgth1, lgth2; in MSalign2m2m_rec() local
1284 int lgth1, lgth2; in MSalignmm_rec() local
2166 int lgth1, lgth2; in Lalignmm_hmout() local
2369 int lgth1, lgth2; in Lalign2m2m_hmout() local
|
| H A D | suboptalign11.c | 44 int l, iin, jin, lgth1, lgth2, k, limk; in gentracking() local
136 int lgth1, lgth2; in suboptalign11() local
|
| H A D | MSalignmm.c | 181 int i, j, l, iin, jin, ifi, jfi, lgth1, lgth2, k, klim; in Atracking() local
351 int lgth1, lgth2; in MSalignmm_tanni() local
675 int lgth1, lgth2; in MSalignmm_rec() local
1678 int lgth1, lgth2; in MSalignmm() local
1956 int lgth1, lgth2; in MSalignmm_tanni_variousdist() local
2283 int lgth1, lgth2; in MSalignmm_rec_variousdist() local
3319 int lgth1, lgth2; in MSalignmm_variousdist() local
|
| H A D | rna.c | 340 int lgth1 = strlen( seq1[0] ); local
|
| H A D | Dalignmm.c | 106 static void imp_match_out_vead_tate( double *imp, int j1, int lgth1 ) in imp_match_out_vead_tate()
118 void imp_match_init_strictD( double *imp, int clus1, int clus2, int lgth1, int lgth2, char **seq1, … in imp_match_init_strictD()
639 int i, j, l, iin, jin, ifi, jfi, lgth1, lgth2, k, limk; in Atracking_localhom() local
779 int i, j, l, iin, jin, ifi, jfi, lgth1, lgth2, k, limk; in Atracking() local
2715 int lgth1, lgth2; in D__align() local
4551 int lgth1, lgth2; in D__align_variousdist() local
|