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Searched defs:locatable (Results 1 – 11 of 11) sorted by relevance

/dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/tools/funcotator/dataSources/
H A DLocatableFuncotationCreatorUnitTest.java17 final SimpleInterval locatable = new SimpleInterval("1", 1000, 2000); in testCreate() local
/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/funcotator/dataSources/
H A DLocatableFuncotationCreator.java63 …public static Funcotation create(final Locatable locatable, final Allele altAllele, final String d… in create()
/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/utils/read/
H A DGATKRead.java81 void setPosition( final Locatable locatable ); in setPosition()
217 void setMatePosition( final Locatable locatable ); in setMatePosition()
H A DSAMRecordToGATKReadAdapter.java116 public void setPosition( final Locatable locatable ) { in setPosition()
218 public void setMatePosition( final Locatable locatable ) { in setMatePosition()
/dports/java/eclipse/eclipse.platform.releng.aggregator-R4_16/eclipse.jdt.debug/org.eclipse.jdt.debug.jdi.tests/tests/org/eclipse/debug/jdi/tests/
H A DLocatableTest.java122 Locatable locatable = (Locatable) iterator.next(); in testJDILocation() local
/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/copynumber/
H A DCollectReadCounts.java238 T getOverlap(final Locatable locatable) { in getOverlap()
/dports/java/eclipse/eclipse.platform.releng.aggregator-R4_16/eclipse.jdt.debug/org.eclipse.jdt.debug/jdi/org/eclipse/jdi/internal/
H A DLocationImpl.java96 public int compareTo(Locatable locatable) { in compareTo()
/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/utils/
H A DGenomeLocParser.java310 final Locatable locatable = getUnambiguousInterval(str, allResolvedIntervals); in parseGenomeLoc() local
406 public GenomeLoc createGenomeLoc(final Locatable locatable) { in createGenomeLoc()
H A DSimpleInterval.java46 public SimpleInterval(final Locatable locatable){ in SimpleInterval()
/dports/lang/rust/rustc-1.58.1-src/compiler/rustc_typeck/src/check/
H A Dwriteback.rs380 let locatable = captured_place.info.path_expr_id.unwrap_or_else(|| { in visit_min_capture_map() localVariable
405 let locatable = in visit_fake_reads_map() localVariable
/dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/utils/
H A DGenomeLocParserUnitTest.java422 final Locatable locatable = new SimpleInterval("1", 1, 5); in testCreationFromLocatable() local