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Searched defs:loglk (Results 1 – 5 of 5) sorted by relevance

/dports/biology/phyml/phyml-3.3.20200621/src/
H A Dtimes.c480 phydbl loglk; in TIMES_Lk_Yule_Joint() local
571 phydbl loglk; in TIMES_Lk_Yule_Order() local
1204 phydbl loglk; in TIMES_Lk_Yule_Order_Root_Cond() local
H A Dgeo.c685 phydbl loglk; in GEO_Lk() local
H A Dlk.c1907 …bl Lk_Given_Two_Seq(calign *data, int numseq1, int numseq2, phydbl dist, t_mod *mod, phydbl *loglk) in Lk_Given_Two_Seq()
/dports/biology/fasttree/FastTree-2.1.10_5/
H A DFastTree-2.1.10.c2317 double loglk = TreeLogLk(NJ, /*site_likelihoods*/NULL); in main() local
2353 double loglk = TreeLogLk(NJ, /*site_likelihoods*/NULL); in main() local
2393 double loglk = TreeLogLk(NJ, /*site_likelihoods*/NULL); in main() local
5181 double loglk = 0.0; /* stores underflow of lk during the loop over positions */ in PairLogLk() local
5426 double loglk = PairLogLk(pA, pB, branch_lengths[0]+branch_lengths[1], in MLQuartetLogLk() local
5442 …double loglk = PairLogLk(qo->pair1, qo->pair2, x, qo->nPos, qo->transmat, qo->rates, /*site_lk*/NU… in PairNegLogLk() local
5739 double loglk = 0.0; in TreeLogLk() local
5931 double loglk = TreeLogLk(gtr->NJ, /*site_loglk*/NULL); in GTRNegLogLk() local
5975 double loglk = TreeLogLk(NJ, /*OUT*/&site_loglk[NJ->nPos*iRate]); in MLSiteLikelihoodsByRate() local
6065 double loglk = 0.0; in GammaLogLk() local
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/dports/devel/plan9port/plan9port-1f098efb7370a0b28306d10681e21883fb1c1507/src/cmd/venti/srv/
H A Dmgr.c180 static QLock loglk; variable