| /dports/biology/seqan1/seqan-1.3.1/seqan/refinement/ |
| H A D | graph_algorithm_refine_inexact.h | 261 matchRefinement(TAlignmentString & alis, in matchRefinement() function
284 matchRefinement(TAlignmentString & alis, in matchRefinement() function
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| H A D | graph_algorithm_refine_exact.h | 433 matchRefinement(TAlignmentString & alis, in matchRefinement() function
540 matchRefinement(TAlignmentString & alis, in matchRefinement() function
555 matchRefinement(TFragmentString & matches, in matchRefinement() function
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| H A D | graph_algorithm_refine_exact_iterative.h | 449 matchRefinement(TAlignmentString & alis, in matchRefinement() function
625 matchRefinement(TAlignmentString & alis, in matchRefinement() function
654 matchRefinement(TFragmentString & matches, in matchRefinement() function
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| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/graph_align/ |
| H A D | graph_algorithm_refine_inexact.h | 298 matchRefinement(TAlignmentString & alis, in matchRefinement() function
315 matchRefinement(TAlignmentString & alis, in matchRefinement() function
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| H A D | graph_algorithm_refine_exact.h | 424 matchRefinement(TAlignmentString & alis, in matchRefinement() function
530 matchRefinement(TAlignmentString & alis, in matchRefinement() function
544 matchRefinement(TFragmentString & matches, in matchRefinement() function
|
| H A D | graph_algorithm_refine_exact_iterative.h | 477 matchRefinement(TAlignmentString & alis, in matchRefinement() function
657 matchRefinement(TAlignmentString & alis, in matchRefinement() function
672 matchRefinement(TFragmentString & matches, in matchRefinement() function
|
| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/graph_align/ |
| H A D | graph_algorithm_refine_inexact.h | 298 matchRefinement(TAlignmentString & alis, in matchRefinement() function
315 matchRefinement(TAlignmentString & alis, in matchRefinement() function
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| H A D | graph_algorithm_refine_exact.h | 424 matchRefinement(TAlignmentString & alis, in matchRefinement() function
530 matchRefinement(TAlignmentString & alis, in matchRefinement() function
544 matchRefinement(TFragmentString & matches, in matchRefinement() function
|
| H A D | graph_algorithm_refine_exact_iterative.h | 477 matchRefinement(TAlignmentString & alis, in matchRefinement() function
657 matchRefinement(TAlignmentString & alis, in matchRefinement() function
672 matchRefinement(TFragmentString & matches, in matchRefinement() function
|
| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/graph_align/ |
| H A D | graph_algorithm_refine_inexact.h | 303 matchRefinement(TAlignmentString & alis, in matchRefinement() function
321 matchRefinement(TAlignmentString & alis, in matchRefinement() function
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| H A D | graph_algorithm_refine_exact.h | 432 matchRefinement(TAlignmentString & alis, in matchRefinement() function
539 matchRefinement(TAlignmentString & alis, in matchRefinement() function
554 matchRefinement(TFragmentString & matches, in matchRefinement() function
|
| H A D | graph_algorithm_refine_exact_iterative.h | 484 matchRefinement(TAlignmentString & alis, in matchRefinement() function
651 matchRefinement(TAlignmentString & alis, in matchRefinement() function
667 matchRefinement(TFragmentString & matches, in matchRefinement() function
|