Searched defs:maxQpos (Results 1 – 7 of 7) sorted by relevance
56 final int maxQpos=retVec[1]; in alignForward() local105 final int maxQpos=retVec[1]; in alignForwardShort() local136 int maxQpos=-1; in alignForwardPseudo() local232 int maxQpos=-1; in alignForwardShortPseudo() local
31 int maxQpos=-1; in alignForward() local131 int maxQpos=-1; in alignForwardShort() local
36 int maxQpos=-1; in alignForward() local152 int maxQpos=-1; in alignForwardShort() local
17 public int maxQpos; field in AlignmentResult
23 int maxQpos=-1; in alignForwardJNI() local108 jshort maxQpos=-1; in alignForward16JNI() local209 jint maxQpos=-1; in alignForwardShortJNI() local297 jshort maxQpos=-1; in alignForwardShort16JNI() local385 jshort maxQpos=-1; in alignForwardShort16JNI_352() local
96 final int maxQpos=r.length()-rightBorder; in add() local